RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DPRXA6NFQ7 191 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 M0R1B8 84 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 P2RY10O00398 339 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 GABRPO00591 440 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 MAGEB3O15480 346 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 PNPP00491 289 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 DBHP09172 617 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 OTX1P32242 354 aaPredicted RBP10.14□□□□□ -0.79
LDLR-212ENST00000560467 TGFBR2P37173 567 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 CRYBB2P43320 205 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 SELENOVP59797 346 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 PPP3R1P63098 170 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 FABP5Q01469 135 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 MFGE8Q08431 387 aaPredicted RBP10.14□□□□□ -0.79
LDLR-212ENST00000560467 HSD17B12Q53GQ0 312 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 ZMAT1Q5H9K5 638 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 C22orf42Q6IC83 251 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 CD200R1LQ6Q8B3 271 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 MRPL21Q7Z2W9 205 aaKnown RBP10.14□□□□□ -0.79
LDLR-212ENST00000560467 CROCCP3Q8IVE0 287 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 OR5D14Q8NGL3 314 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 FGFBP3Q8TAT2 258 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 OR51E1Q8TCB6 317 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 SLC7A6Q92536 515 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 POM121L2Q96KW2 1035 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 C1QTNF5Q9BXJ0 243 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 BCL2L14Q9BZR8 327 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 G6PC2Q9NQR9 355 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 TXNL4BQ9NX01 149 aaKnown RBP10.14□□□□□ -0.79
LDLR-212ENST00000560467 ZNF224Q9NZL3 707 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 SLC25A15Q9Y619 301 aa10.14□□□□□ -0.79
LDLR-212ENST00000560467 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.13□□□□□ -0.793e-7■■■□□ 16.3
LDLR-212ENST00000560467 LOC107986453A0A1B0GWG9 222 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 MEGF11A6BM72 1044 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SSX4O60224 188 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 GPX5O75715 221 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 IGKV3-15P01624 115 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 ERCC1P07992 297 aaPredicted RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 FAM157CP0CG43 387 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SELEP16581 610 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 ZNF14P17017 642 aaPredicted RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 NR4A1P22736 598 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 PTAFRP25105 342 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 CALRP27797 417 aaKnown RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 KIR3DL2P43630 455 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 MAP2K3P46734 347 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SOX2P48431 317 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 ZNF83P51522 516 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 VBP1P61758 197 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 RIPPLY1Q0D2K3 151 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 DGUOKQ16854 277 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 KRTAP24-1Q3LI83 254 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 DTX2Q86UW9 622 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 TPRA1Q86W33 373 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SERPINA12Q8IW75 414 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 RDH10Q8IZV5 341 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 OR8B12Q8NGG6 310 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 C12orf43Q96C57 262 aaKnown RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 C10orf35Q96D05 121 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 REEP6Q96HR9 211 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 FAM71F1Q96KD3 344 aaPredicted RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 PGLYRP3Q96LB9 341 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 OR14A2Q96R54 314 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 BARX1Q9HBU1 254 aaPredicted RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 GPR84Q9NQS5 396 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SNTG1Q9NSN8 517 aa10.13□□□□□ -0.79
LDLR-212ENST00000560467 SF3B6Q9Y3B4 125 aaKnown RBP10.13□□□□□ -0.79
LDLR-212ENST00000560467 CR1P17927 2039 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 LOC100509620A0A075B734 347 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 GGT3PA6NGU5 568 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 DHRS7CA6NNS2 312 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 SHISA9B4DS77 424 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 H3BMQ9 156 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 SRSF10O75494 262 aaKnown RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 F12P00748 615 aaPredicted RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 IL1AP01583 271 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 TTRP02766 147 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CCL2P13500 99 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 GCH1P30793 250 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 DDOSTP39656 456 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 MTNR1BP49286 362 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 RORCP51449 518 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 UCP2P55851 309 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 RPS23P62266 143 aaKnown RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 SRSF2Q01130 221 aaKnown RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 DOC2BQ14184 412 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CTF1Q16619 201 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 TMEM249Q2WGJ8 235 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 KRTAP27-1Q3LI81 207 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 PGAP1Q75T13 922 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CSNK2A3Q8NEV1 391 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 SEMA6DQ8NFY4 1073 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 RPS4Y2Q8TD47 263 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 AP3S1Q92572 193 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 TMEM106AQ96A25 262 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CPNE2Q96FN4 548 aaPredicted RBP10.12□□□□□ -0.79
LDLR-212ENST00000560467 RADILQ96JH8 1075 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 HIST1H2AAQ96QV6 131 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 CENPOQ9BU64 300 aa10.12□□□□□ -0.79
LDLR-212ENST00000560467 DCSTAMPQ9H295 470 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms