RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HPXP02790 462 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 HSMCR30P0CW71 290 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 DDOSTP39656 456 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 MAP2K3P46734 347 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 PTH2RP49190 550 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 TAS2R43P59537 309 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 RPS11P62280 158 aaKnown RBP eCLIP12.56□□□□□ -0.4
COL9A3-209ENST00000469852 CCL8P80075 99 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 BDH1Q02338 343 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 MOGQ16653 247 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 DEFB113Q30KQ7 82 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 GHSRQ92847 366 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 ADAT3Q96EY9 351 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-209ENST00000469852 ELMOD3Q96FG2 381 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 PERPQ96FX8 193 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 ADAT1Q9BUB4 502 aaKnown RBP12.56□□□□□ -0.4
COL9A3-209ENST00000469852 MS4A5Q9H3V2 200 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 CXorf56Q9H5V9 222 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 TMEM100Q9NV29 134 aa12.56□□□□□ -0.4
COL9A3-209ENST00000469852 MRPL15Q9P015 296 aaKnown RBP12.56□□□□□ -0.4
COL9A3-209ENST00000469852 CGGBP1Q9UFW8 167 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-209ENST00000469852 ARID1AO14497 2285 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 ZNF816-ZNF321PA0A0X1KG74 233 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 ZNF850A8MQ14 1090 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 PLPP2O43688 288 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 MTRF1O75570 445 aaKnown RBP12.55□□□□□ -0.4
COL9A3-209ENST00000469852 CST4P01036 141 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 ADH4P08319 380 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 PAX1P15863 534 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 RIPPLY1Q0D2K3 151 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 PRDX4Q13162 271 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 UBE2UQ5VVX9 321 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 LIPKQ5VXJ0 399 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 KRT74Q7RTS7 529 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 ZNF367Q7RTV3 350 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 TGIF2LYQ8IUE0 185 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 SVOPQ8N4V2 548 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 CSNK2A3Q8NEV1 391 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 TSPAN14Q8NG11 270 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 OR13G1Q8NGZ3 307 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 UBASH3BQ8TF42 649 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 HPSE2Q8WWQ2 592 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 PIGCQ92535 297 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 NINJ1Q92982 152 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 MBD6Q96DN6 1003 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 MGLLQ99685 303 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 PAPOLGQ9BWT3 736 aaKnown RBP12.55□□□□□ -0.4
COL9A3-209ENST00000469852 COMMD4Q9H0A8 199 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 CYSLTR2Q9NS75 346 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 HHLA2Q9UM44 414 aa12.55□□□□□ -0.4
COL9A3-209ENST00000469852 ANKRD30BLA7E2S9 258 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 LYNX1G3V0Z9 82 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 INMTO95050 263 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 SMIM18P0DKX4 95 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 LYNX1P0DP58 116 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 BMP4P12644 408 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ATP6V1B1P15313 513 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 LIPAP38571 399 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 SOX2P48431 317 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 RIPPLY3P57055 190 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 MLLT11Q13015 90 aaPredicted RBP12.54□□□□□ -0.4
COL9A3-209ENST00000469852 MAB21L1Q13394 359 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 INSL4Q14641 139 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 OR8G1Q15617 311 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 SSX1Q16384 188 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 CEP78Q5JTW2 689 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 TMEM42Q69YG0 159 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ASPHD2Q6ICH7 369 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 KCTD8Q6ZWB6 473 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 WDR86Q86TI4 376 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 OR13C3Q8NGS6 347 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ITLN1Q8WWA0 313 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 FGGYQ96C11 551 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ORAI1Q96D31 301 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ITPKCQ96DU7 683 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 NR1H4Q96RI1 486 aaPredicted RBP12.54□□□□□ -0.4
COL9A3-209ENST00000469852 GSX2Q9BZM3 304 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ISYNA1Q9NPH2 558 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 GPR173Q9NS66 373 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 BEX4Q9NWD9 120 aaPredicted RBP12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ENPP5Q9UJA9 477 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ZDHHC8Q9ULC8 765 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 ZNF281Q9Y2X9 895 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 HIVEP1P15822 2718 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 TANC2Q9HCD6 1990 aa12.54□□□□□ -0.4
COL9A3-209ENST00000469852 CCDC168Q8NDH2 2452 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TRBV5-5A0A0J9YX44 114 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 LOC100289279A0A1B0GTE1 492 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TRIM64CA6NLI5 447 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 DHRS7CA6NNS2 312 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 GMDSO60547 372 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 CD1AP06126 327 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 CD55P08174 381 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 CPEP16870 476 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 GP2P55259 537 aaKnown RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 ATP5J2P56134 94 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 RPS25P62851 125 aaKnown RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TNFAIP6P98066 277 aaPredicted RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TPBGQ13641 420 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 NEDD8Q15843 81 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms