RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP49	YGL172W	MFT1	P33441	392 aa	Known RBP	7.21	□□□□□ -1.25
NUP49	YGL172W	GCS1	P35197	352 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	TRZ1	P36159	838 aa	Predicted RBP	7.21	□□□□□ -1.25
NUP49	YGL172W	RFS1	P38234	210 aa	Known RBP	7.21	□□□□□ -1.25
NUP49	YGL172W	GEM1	P39722	662 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	SIP5	P40210	489 aa	Known RBP	7.21	□□□□□ -1.25
NUP49	YGL172W	MVP1	P40959	511 aa	Known RBP	7.21	□□□□□ -1.25
NUP49	YGL172W	YFL052W	P43551	465 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	ZAP1	P47043	880 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	ERG5	P54781	538 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	HEH2	Q03281	663 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	YCG1	Q06680	1035 aa		7.21	□□□□□ -1.25
NUP49	YGL172W	TRP2	P00899	507 aa	Known RBP	7.2	□□□□□ -1.26
NUP49	YGL172W	GAL80	P04387	435 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	SCJ1	P25303	377 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	RTG1	P32607	177 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	PEX2	P32800	271 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	PCH2	P38126	564 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	SHQ1	P40486	507 aa	Predicted RBP	7.2	□□□□□ -1.26
NUP49	YGL172W	FAF1	P40546	346 aa	Predicted RBP	7.2	□□□□□ -1.26
NUP49	YGL172W	POL31	P46957	487 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	LAA1	P39526	2014 aa		7.2	□□□□□ -1.26
NUP49	YGL172W	ENO1	P00924	437 aa	Known RBP	7.19	□□□□□ -1.26
NUP49	YGL172W	MTF2	P10849	440 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	EXO5	P38289	585 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	DYS1	P38791	387 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	YEL023C	P39992	682 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	HXT8	P40886	569 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	MUB1	Q03162	620 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	UTP5	Q04177	643 aa	Known RBP	7.19	□□□□□ -1.26
NUP49	YGL172W	VPS38	Q05919	439 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	OPY2	Q06810	360 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	TSR1	Q07381	788 aa	Known RBP	7.19	□□□□□ -1.26
NUP49	YGL172W	NEW1	Q08972	1196 aa	Known RBP	7.19	□□□□□ -1.26
NUP49	YGL172W	YOL098C	Q12496	1037 aa		7.19	□□□□□ -1.26
NUP49	YGL172W	ENO2	P00925	437 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	SNF1	P06782	633 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	IDI1	P15496	288 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	VMA4	P22203	233 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	URK1	P27515	501 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	GAC1	P28006	793 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	SPC110	P32380	944 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	SHE3	P38272	425 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	PCM1	P38628	557 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	YMR124W	P39523	943 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	YJR054W	P47114	497 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	INP52	P50942	1183 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	MZM1	Q03429	123 aa	Predicted RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	MRX10	Q05648	414 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	MRI1	Q06489	411 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	7.18	□□□□□ -1.26	not detected
NUP49	YGL172W	TPK1	P06244	397 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	YER152C	P10356	443 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	VBA3	P25594	458 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	SPT5	P27692	1063 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	FRE1	P32791	686 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	GYP6	P32806	458 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	YKL050C	P35736	922 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	TGL4	P36165	910 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	VBA5	P36172	582 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	HMT1	P38074	348 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	CBR1	P38626	284 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	YIR016W	P40572	265 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	PHO86	P46956	311 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	NUT1	P53114	1132 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	YGL036W	P53185	909 aa	Predicted RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	GPD1	Q00055	391 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	YVH1	Q02256	364 aa	Known RBP	7.18	□□□□□ -1.26
NUP49	YGL172W	SPO71	Q03868	1245 aa		7.18	□□□□□ -1.26
NUP49	YGL172W	KGD2	P19262	463 aa	Predicted RBP	7.17	□□□□□ -1.26
NUP49	YGL172W	SAT4	P25333	603 aa	Known RBP	7.17	□□□□□ -1.26
NUP49	YGL172W	LRE1	P25579	583 aa	Known RBP	7.17	□□□□□ -1.26
NUP49	YGL172W	SLA2	P33338	968 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	KDX1	P36005	433 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	DCW1	P36091	449 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	NOP4	P37838	685 aa	Known RBP	7.17	□□□□□ -1.26
NUP49	YGL172W	YTA12	P40341	825 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	SAM3	Q08986	587 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	TAF10	Q12030	206 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	BMT6	Q12291	365 aa		7.17	□□□□□ -1.26
NUP49	YGL172W	RPS3	P05750	240 aa	Known RBP	7.16	□□□□□ -1.26
NUP49	YGL172W	ATP1	P07251	545 aa	Known RBP	7.16	□□□□□ -1.26
NUP49	YGL172W	MAS1	P10507	462 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	YJU3	P28321	313 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	VPH1	P32563	840 aa	Known RBP	7.16	□□□□□ -1.26
NUP49	YGL172W	YBR284W	P38150	797 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	APM2	P38700	605 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	YEL075C	P39972	122 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	DSE1	P40077	573 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	MMF1	P40185	145 aa	Known RBP	7.16	□□□□□ -1.26
NUP49	YGL172W	ASG7	P46993	209 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	MND1	P53102	219 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	ALF1	P53904	254 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	CTR9	P89105	1077 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	YLR257W	Q06146	321 aa	Known RBP	7.16	□□□□□ -1.26
NUP49	YGL172W	YLR001C	Q07895	862 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	TRE1	Q08919	783 aa		7.16	□□□□□ -1.26
NUP49	YGL172W	YLR422W	Q06409	1932 aa		7.15	□□□□□ -1.26
NUP49	YGL172W	JIP3	O13555	125 aa		7.15	□□□□□ -1.27
NUP49	YGL172W	POL3	P15436	1097 aa		7.15	□□□□□ -1.27

Retrieved 100 of 5,963 RNA–protein pairs in 59.2 ms