RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	HIS7	P33734	552 aa	Known RBP	4.62	□□□□□ -1.67
RUB1	YDR139C	PPS1	P38148	807 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	BCD1	P38772	366 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	YHR202W	P38887	602 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	BEM4	P39011	633 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	UBC11	P52492	156 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	MTL1	P53214	551 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	COX18	P53239	316 aa		4.62	□□□□□ -1.67
RUB1	YDR139C	HRP1	Q99383	534 aa	Known RBP	4.62	□□□□□ -1.67
RUB1	YDR139C	ERG6	P25087	383 aa	Known RBP	4.61	□□□□□ -1.67
RUB1	YDR139C	REV7	P38927	245 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	LYS9	P38999	446 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	NUP60	P39705	539 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	FMP52	P40008	231 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	NUG1	P40010	520 aa	Known RBP	4.61	□□□□□ -1.67
RUB1	YDR139C	YEN1	P40028	759 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	CCT5	P40413	562 aa	Known RBP	4.61	□□□□□ -1.67
RUB1	YDR139C	GPP1	P41277	250 aa	Known RBP	4.61	□□□□□ -1.67
RUB1	YDR139C	SLI1	P53304	468 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	RIA1	P53893	1110 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	ISA1	Q07821	250 aa	Predicted RBP	4.61	□□□□□ -1.67
RUB1	YDR139C	SGO1	Q08490	590 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	ACF2	Q12168	779 aa		4.61	□□□□□ -1.67
RUB1	YDR139C	TSR4	P25040	408 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	GRX4	P32642	244 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	OAR1	P35731	278 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	YHL017W	P38745	532 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	OAF1	P39720	1047 aa	Predicted RBP	4.6	□□□□□ -1.67
RUB1	YDR139C	MNN11	P46985	422 aa	Known RBP	4.6	□□□□□ -1.67
RUB1	YDR139C	TIM44	Q01852	431 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	YMR206W	Q03695	313 aa		4.6	□□□□□ -1.67
RUB1	YDR139C	DIA2	Q08496	732 aa	Predicted RBP	4.6	□□□□□ -1.67
RUB1	YDR139C	PEX1	P24004	1043 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	MVD1	P32377	396 aa	Known RBP	4.59	□□□□□ -1.67
RUB1	YDR139C	DID4	P36108	232 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	FMO1	P38866	432 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	GET2	P40056	285 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	NOP9	P47077	666 aa	Known RBP	4.59	□□□□□ -1.67
RUB1	YDR139C	YAP1802	P53309	568 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	ECM9	Q02202	377 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	YMR210W	Q03649	449 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	VHS3	Q08438	674 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	ECM3	Q99252	613 aa		4.59	□□□□□ -1.67
RUB1	YDR139C	SIR3	P06701	978 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	SWI6	P09959	803 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	IMG2	P25642	146 aa	Predicted RBP	4.58	□□□□□ -1.68
RUB1	YDR139C	HIR1	P32479	840 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	MOH1	P38191	138 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	YNL195C	P40168	261 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	RSC8	P43609	557 aa	Known RBP	4.58	□□□□□ -1.68
RUB1	YDR139C	TEL2	P53038	688 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	MUK1	Q02866	612 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	YHM2	Q04013	314 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	YLR407W	Q06070	228 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	HBT1	Q07653	1046 aa	Known RBP	4.58	□□□□□ -1.68
RUB1	YDR139C	MCH5	Q08777	521 aa		4.58	□□□□□ -1.68
RUB1	YDR139C	CLF1	Q12309	687 aa	Predicted RBP	4.58	□□□□□ -1.68
RUB1	YDR139C	ERG20	P08524	352 aa	Known RBP	4.57	□□□□□ -1.68
RUB1	YDR139C	SEC65	P29478	273 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	PET127	P32606	800 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	YKU70	P32807	602 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	STB4	P50104	949 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	PAN2	P53010	1115 aa	Predicted RBP	4.57	□□□□□ -1.68
RUB1	YDR139C	PTA1	Q01329	785 aa	Predicted RBP	4.57	□□□□□ -1.68
RUB1	YDR139C	RPS21B	Q3E754	87 aa	Known RBP	4.57	□□□□□ -1.68
RUB1	YDR139C	YKL033W-A	Q86ZR7	236 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	APM4	Q99186	491 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	TAD3	Q9URQ3	322 aa		4.57	□□□□□ -1.68
RUB1	YDR139C	FRS1	P15624	595 aa	Known RBP	4.56	□□□□□ -1.68
RUB1	YDR139C	OAF3	P36023	863 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	PCL5	P38794	229 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	SFB3	P38810	929 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	HXT6	P39003	570 aa	Known RBP	4.56	□□□□□ -1.68
RUB1	YDR139C	HXT7	P39004	570 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	UBA2	P52488	636 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	SSL2	Q00578	843 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	THI22	Q06490	572 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	VPS36	Q06696	566 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	HFI1	Q12060	488 aa		4.56	□□□□□ -1.68
RUB1	YDR139C	PIG2	P40187	538 aa		4.55	□□□□□ -1.68
RUB1	YDR139C	DUG1	P43616	481 aa	Known RBP	4.55	□□□□□ -1.68
RUB1	YDR139C	NOP15	P53927	220 aa	Predicted RBP	4.55	□□□□□ -1.68
RUB1	YDR139C	VBA4	Q04602	768 aa	Known RBP	4.55	□□□□□ -1.68
RUB1	YDR139C	ZRT2	Q12436	422 aa		4.55	□□□□□ -1.68
RUB1	YDR139C	POM34	Q12445	299 aa		4.55	□□□□□ -1.68
RUB1	YDR139C	RPS17A	P02407	136 aa	Known RBP	4.54	□□□□□ -1.68
RUB1	YDR139C	RPS17B	P14127	136 aa	Known RBP	4.54	□□□□□ -1.68
RUB1	YDR139C	SEC15	P22224	910 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	KIN82	P25341	720 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	PHO11	P35842	467 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	BIT2	P38346	545 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	CBR1	P38626	284 aa	Known RBP	4.54	□□□□□ -1.68
RUB1	YDR139C	PHO12	P38693	467 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
RUB1	YDR139C	BIT61	P47041	543 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	FHN1	P53279	174 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	PPN1	Q04119	674 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	YPS7	Q06325	596 aa		4.54	□□□□□ -1.68
RUB1	YDR139C	RPS9B	P05755	195 aa	Known RBP	4.53	□□□□□ -1.68
RUB1	YDR139C	RPS21A	P0C0V8	87 aa	Known RBP	4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 29.6 ms