RNA–Protein interactions for RNA: YDL091C

UBX3, Transcript of Subunit of the DSC ubiquitin ligase complex, yeast

Gene UBX3, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX3	YDL091C	YJR039W	P47107	1121 aa		4.22	□□□□□ -1.73
UBX3	YDL091C	FHN1	P53279	174 aa		4.22	□□□□□ -1.73
UBX3	YDL091C	NOP14	Q99207	810 aa	Known RBP	4.22	□□□□□ -1.73
UBX3	YDL091C	PEX1	P24004	1043 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	APN2	P38207	520 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	CBR1	P38626	284 aa	Known RBP	4.21	□□□□□ -1.74
UBX3	YDL091C	NMD2	P38798	1089 aa	Known RBP	4.21	□□□□□ -1.74
UBX3	YDL091C	SFB3	P38810	929 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	MGS1	P40151	587 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	NOP9	P47077	666 aa	Known RBP	4.21	□□□□□ -1.74
UBX3	YDL091C	MET13	P53128	600 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	RGC1	Q06108	1083 aa	Known RBP	4.21	□□□□□ -1.74
UBX3	YDL091C	DCS2	Q12123	353 aa		4.21	□□□□□ -1.74
UBX3	YDL091C	GFA1	P14742	717 aa	Known RBP	4.2	□□□□□ -1.74
UBX3	YDL091C	RPL8A	P17076	256 aa	Known RBP	4.2	□□□□□ -1.74
UBX3	YDL091C	CDC43	P18898	376 aa		4.2	□□□□□ -1.74
UBX3	YDL091C	AKL1	P38080	1108 aa	Known RBP	4.2	□□□□□ -1.74
UBX3	YDL091C	NDC80	P40460	691 aa		4.2	□□□□□ -1.74
UBX3	YDL091C	VPS73	P53142	486 aa	Known RBP	4.2	□□□□□ -1.74
UBX3	YDL091C	SUT2	Q12286	268 aa		4.2	□□□□□ -1.74
UBX3	YDL091C	TAF3	Q12297	353 aa		4.2	□□□□□ -1.74
UBX3	YDL091C	CLF1	Q12309	687 aa	Predicted RBP	4.2	□□□□□ -1.74
UBX3	YDL091C	KIN3	P22209	435 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	PHO11	P35842	467 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	UBS1	P38290	277 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	PHO12	P38693	467 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	CRP1	P38845	465 aa	Known RBP	4.19	□□□□□ -1.74
UBX3	YDL091C	TAH11	P47112	604 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	GUD1	Q07729	489 aa		4.19	□□□□□ -1.74
UBX3	YDL091C	DMC1	P25453	334 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	SEC6	P32844	805 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	TDP1	P38319	544 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	MNN1	P39106	762 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	YJL206C	P39529	758 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	ARG2	P40360	574 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	CCT7	P42943	550 aa	Known RBP	4.18	□□□□□ -1.74
UBX3	YDL091C	RSC8	P43609	557 aa	Known RBP	4.18	□□□□□ -1.74
UBX3	YDL091C	ATG4	P53867	494 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	UTP14	Q04500	899 aa	Known RBP	4.18	□□□□□ -1.74
UBX3	YDL091C	THI22	Q06490	572 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	MLH3	Q12083	715 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	ZRT2	Q12436	422 aa		4.18	□□□□□ -1.74
UBX3	YDL091C	YPT7	P32939	208 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	MAL31	P38156	614 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	BEM4	P39011	633 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	ATF1	P40353	525 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	COX18	P53239	316 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	GPD1	Q00055	391 aa	Known RBP	4.17	□□□□□ -1.74
UBX3	YDL091C	DIA2	Q08496	732 aa	Predicted RBP	4.17	□□□□□ -1.74
UBX3	YDL091C	ECM3	Q99252	613 aa		4.17	□□□□□ -1.74
UBX3	YDL091C	THR1	P17423	357 aa	Known RBP	4.16	□□□□□ -1.74
UBX3	YDL091C	HCA4	P20448	770 aa	Known RBP	4.16	□□□□□ -1.74
UBX3	YDL091C	SFP1	P32432	683 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	BCS1	P32839	456 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	GLG1	P36143	616 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	BIT2	P38346	545 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	YHR202W	P38887	602 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	BDH2	P39713	417 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	NUG1	P40010	520 aa	Known RBP	4.16	□□□□□ -1.74
UBX3	YDL091C	YNL195C	P40168	261 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	CTR1	P49573	406 aa		4.16	□□□□□ -1.74
UBX3	YDL091C	SDA1	P53313	767 aa	Known RBP	4.16	□□□□□ -1.74
UBX3	YDL091C	PRP28	P23394	588 aa		4.15	□□□□□ -1.74
UBX3	YDL091C	DNM1	P54861	757 aa		4.15	□□□□□ -1.74
UBX3	YDL091C	ISA1	Q07821	250 aa	Predicted RBP	4.15	□□□□□ -1.74
UBX3	YDL091C	AIM44	Q99299	758 aa		4.15	□□□□□ -1.74
UBX3	YDL091C	PIG2	P40187	538 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	YIL166C	P40445	542 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	RET2	P43621	546 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	ILV6	P25605	309 aa	Known RBP	4.14	□□□□□ -1.75
UBX3	YDL091C	PET127	P32606	800 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	CUE2	P36075	443 aa	Known RBP	4.14	□□□□□ -1.75
UBX3	YDL091C	SET3	P36124	751 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	CKB2	P38930	258 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	VPS36	Q06696	566 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	USV1	Q12132	391 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	POM34	Q12445	299 aa		4.14	□□□□□ -1.75
UBX3	YDL091C	ADR1	P07248	1323 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	ERG20	P08524	352 aa	Known RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	FRS1	P15624	595 aa	Known RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	FEN2	P25621	512 aa	Known RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	IMG2	P25642	146 aa	Predicted RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	EMP70	P32802	667 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	BIT61	P47041	543 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	YJR096W	P47137	282 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	LGE1	Q02796	332 aa	Known RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	VHS3	Q08438	674 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	CHS5	Q12114	671 aa	Known RBP	4.13	□□□□□ -1.75
UBX3	YDL091C	NDJ1	Q12366	352 aa		4.13	□□□□□ -1.75
UBX3	YDL091C	ADY2	P25613	283 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	FUB1	P25659	250 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	YKU70	P32807	602 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	PPZ2	P33329	710 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	YKR075C	P36155	307 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	TDA3	P38758	523 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	SNM1	P40993	198 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	YLR407W	Q06070	228 aa		4.12	□□□□□ -1.75
UBX3	YDL091C	BNR1	P40450	1375 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	RPN13	O13563	156 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	TUB1	P09733	447 aa	Known RBP	4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms