RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 PPFIA1Q13136 1202 aa6.76□□□□□ -1.33
SCN1A-212ENST00000636194 RBBP5Q15291 538 aaKnown RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 GPHNQ9NQX3 736 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 ORC3Q9UBD5 711 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 LMNAP02545 664 aaKnown RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 SLC12A2P55011 1212 aa6.76□□□□□ -1.33
SCN1A-212ENST00000636194 ST5P78524 1137 aa6.76□□□□□ -1.33
SCN1A-212ENST00000636194 NUTM2DQ5VT03 806 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 MPHOSPH9Q99550 1183 aa6.76□□□□□ -1.33
SCN1A-212ENST00000636194 SCHIP1Q9P0W5 487 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 COPG1Q9Y678 874 aaKnown RBP6.76□□□□□ -1.33
SCN1A-212ENST00000636194 TYW5A2RUC4 315 aaKnown RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 CTAGE9A4FU28 777 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 GKAP1Q5VSY0 366 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 TRIM6Q9C030 488 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 DRC3Q9H069 523 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 PDRG1Q9NUG6 133 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 NINQ8N4C6 2090 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 PHEXP78562 749 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 TMTC4Q5T4D3 741 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 SMARCC2Q8TAQ2 1214 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 THEGQ9P2T0 379 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 NACADO15069 1562 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 FAM95CA0A1B0GW59 222 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 RAB11FIP3O75154 756 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 LDHCP07864 332 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 NBPF7P0C2Y1 421 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 SLC9A5Q14940 896 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 INAQ16352 499 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 CPLX4Q7Z7G2 160 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 TEX12Q9BXU0 123 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 FAM204AQ9H8W3 233 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 MINDY4BA8MYZ0 360 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 ELMSAN1Q6PJG2 1045 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 NOX5Q96PH1 765 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 IPO11Q9UI26 975 aaKnown RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 PPP1R9AQ9ULJ8 1098 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 TUBBP07437 444 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 COG7P83436 770 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 PLS1Q14651 629 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 ATP2B3Q16720 1220 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 LRRC23Q53EV4 343 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 METTL24Q5JXM2 366 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 AACSQ86V21 672 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 FAM200AQ8TCP9 573 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 ARFGAP3Q9NP61 516 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 IRAK4Q9NWZ3 460 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 SLC4A1P02730 911 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 ZNF365Q70YC5 407 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 ARFGAP2Q8N6H7 521 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 HELBQ8NG08 1087 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 M0QZ92 97 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 URI1O94763 535 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 PDXDC1Q6P996 788 aa6.75□□□□□ -1.33
SCN1A-212ENST00000636194 RIOK1Q9BRS2 568 aaKnown RBP6.75□□□□□ -1.33
SCN1A-212ENST00000636194 FANCIQ9NVI1 1328 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 SPDYE3A6NKU9 549 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PDCLQ13371 301 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 ANKRD35Q8N283 1001 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 MCUR1Q96AQ8 359 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 AMOTL2Q9Y2J4 779 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PAXBP1Q9Y5B6 917 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 STX1AQ16623 288 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 HDGFL1Q5TGJ6 251 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 FNBP4Q8N3X1 1017 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PPP4R1Q8TF05 950 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 GTF3C6Q969F1 213 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 MRPL46Q9H2W6 279 aaKnown RBP6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CDV3Q9UKY7 258 aaKnown RBP6.74□□□□□ -1.33
SCN1A-212ENST00000636194 FRMD4BQ9Y2L6 1034 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 NLRP6P59044 892 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 ARHGAP4P98171 946 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 B4GALNT4Q76KP1 1039 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 DPH6Q7L8W6 267 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PANK3Q9H999 370 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 APOBRQ0VD83 1088 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 GRM1Q13255 1194 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 SH2B1Q9NRF2 756 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-212ENST00000636194 E9PMD0 336 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 ZNF165P49910 485 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CROCCP2Q86T23 111 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 TRIM8Q9BZR9 551 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PDS5BQ9NTI5 1447 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CLEC11AQ9Y240 323 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 EBAG9O00559 213 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 PCK1P35558 622 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CCDC92Q53HC0 331 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CCDC183Q5T5S1 534 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 SYTL2Q9HCH5 934 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 FAN1Q9Y2M0 1017 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 FYCO1Q9BQS8 1478 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 CNTLNQ9NXG0 1405 aa6.74□□□□□ -1.33
SCN1A-212ENST00000636194 AKR1B10O60218 316 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 KRT10P13645 584 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SMTNP53814 917 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 TBCCQ15814 346 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 WDR44Q5JSH3 913 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 CCDC102BQ68D86 513 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 NLRP9Q7RTR0 991 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 NOP9Q86U38 636 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms