RNA–Protein interactions for RNA: ENST00000617998.4

POLR2A-209, Transcript of RNA polymerase II subunit A, humanhuman

TSL 1 (best)

Gene POLR2A, Length 6,751 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2A-209ENST00000617998 CALM1P0DP23 149 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 CALM2P0DP24 149 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 CALM3P0DP25 149 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 IL6STP40189 918 aaPredicted RBP12.68□□□□□ -0.38
POLR2A-209ENST00000617998 SREBF2Q12772 1141 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 ARHGEF25Q86VW2 580 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 TSPYL2Q9H2G4 693 aaPredicted RBP12.68□□□□□ -0.38
POLR2A-209ENST00000617998 CEP131Q9UPN4 1083 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 XDHP47989 1333 aa12.68□□□□□ -0.38
POLR2A-209ENST00000617998 CELF2O95319 508 aaKnown RBP12.68□□□□□ -0.38
POLR2A-209ENST00000617998 VEGFAP15692 232 aaPredicted RBP12.68□□□□□ -0.38
POLR2A-209ENST00000617998 USP17L8P0C7I0 530 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 CCDC39Q9UFE4 941 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 ALDH1L2Q3SY69 923 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 KRT23Q9C075 422 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 USP17L3A6NCW0 530 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 USP17L4A6NCW7 530 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 USP17L1Q7RTZ2 530 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 SSRP1Q08945 709 aaKnown RBP12.67□□□□□ -0.38
POLR2A-209ENST00000617998 RNF169Q8NCN4 708 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 ZNF354CQ86Y25 554 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 RRAGCQ9HB90 399 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 CWF19L2Q2TBE0 894 aaKnown RBP12.67□□□□□ -0.38
POLR2A-209ENST00000617998 ABI1Q8IZP0 508 aa12.67□□□□□ -0.38
POLR2A-209ENST00000617998 A0A1W2PP64 1363 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 PLEKHH1Q9ULM0 1364 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 HAND2P61296 217 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 APOBEC3FQ8IUX4 373 aaKnown RBP12.66□□□□□ -0.38
POLR2A-209ENST00000617998 EXOC6Q8TAG9 804 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 RRP36Q96EU6 259 aaKnown RBP12.66□□□□□ -0.38
POLR2A-209ENST00000617998 PRC1O43663 620 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 CEBPZQ03701 1054 aaKnown RBP12.66□□□□□ -0.38
POLR2A-209ENST00000617998 HEATR3Q7Z4Q2 680 aa12.66□□□□□ -0.38
POLR2A-209ENST00000617998 JAKMIP1Q96N16 626 aaKnown RBP12.66□□□□□ -0.38
POLR2A-209ENST00000617998 KIF20AO95235 890 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 PKD2L1Q9P0L9 805 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 ZBTB1Q9Y2K1 713 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 ERCC6L2Q5T890 1561 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 MAST1Q9Y2H9 1570 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 TNS3Q68CZ2 1445 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 SSR1P43307 286 aaKnown RBP12.65□□□□□ -0.38
POLR2A-209ENST00000617998 RSPH3Q86UC2 560 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 SMC1BQ8NDV3 1235 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 FNBP4Q8N3X1 1017 aaPredicted RBP12.65□□□□□ -0.38
POLR2A-209ENST00000617998 CAMSAP1Q5T5Y3 1602 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 IGSF1Q8N6C5 1336 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 MX1P20591 662 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 WTAPQ15007 396 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 ZFYVE28Q9HCC9 887 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.388e-7■■■□□ 14.6
POLR2A-209ENST00000617998 LMNB1P20700 586 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 MFSD14CQ5VZR4 134 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 KIFC2Q96AC6 838 aa12.65□□□□□ -0.38
POLR2A-209ENST00000617998 FAM212AQ96EL1 285 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 METTL22Q9BUU2 404 aaPredicted RBP12.64□□□□□ -0.39
POLR2A-209ENST00000617998 MLXIPQ9HAP2 919 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 ECHDC1Q9NTX5 307 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 DNM2P50570 870 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 USP14P54578 494 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 CCDC70Q6NSX1 233 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 MICALL1Q8N3F8 863 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 MKRN1Q9UHC7 482 aaKnown RBP12.64□□□□□ -0.39
POLR2A-209ENST00000617998 PZPP20742 1482 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 NAPAP54920 295 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 CNNM2Q9H8M5 875 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 GPCPD1Q9NPB8 672 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 ZHX1Q9UKY1 873 aaPredicted RBP12.64□□□□□ -0.39
POLR2A-209ENST00000617998 ANKARQ7Z5J8 1434 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 MROH5Q6ZUA9 1318 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 TFRCP02786 760 aaKnown RBP12.64□□□□□ -0.39
POLR2A-209ENST00000617998 TAF1CQ15572 869 aaPredicted RBP12.64□□□□□ -0.39
POLR2A-209ENST00000617998 FLOT1O75955 427 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 CHRNA5P30532 468 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 NEK4P51957 841 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 CCDC173Q0VFZ6 552 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 CEP57L1Q8IYX8 460 aa12.64□□□□□ -0.39
POLR2A-209ENST00000617998 ZBED9Q6R2W3 1325 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 PHACTR2O75167 634 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 AATFQ9NY61 560 aaKnown RBP eCLIP12.63□□□□□ -0.39
POLR2A-209ENST00000617998 LEMD3Q9Y2U8 911 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 SLC1A4P43007 532 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 SASS6Q6UVJ0 657 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 CHURC1Q8WUH1 139 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 MAP3K1Q13233 1512 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 MAPKAPK5Q8IW41 473 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 TMEM57Q8N5G2 664 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 FCHSD1Q86WN1 690 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 PPP2R3CQ969Q6 453 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 TBCAO75347 108 aaKnown RBP12.63□□□□□ -0.39
POLR2A-209ENST00000617998 NUCB2P80303 420 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 KMT5BQ4FZB7 885 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 CALML4Q96GE6 196 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 CDCA7LQ96GN5 454 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 ROBO2Q9HCK4 1378 aa12.63□□□□□ -0.39
POLR2A-209ENST00000617998 PALM3A6NDB9 673 aaPredicted RBP12.62□□□□□ -0.39
POLR2A-209ENST00000617998 PDE4DQ08499 809 aa12.62□□□□□ -0.39
POLR2A-209ENST00000617998 CCDC144CPQ8IYA2 1237 aa12.62□□□□□ -0.39
POLR2A-209ENST00000617998 CCDC148Q8NFR7 591 aa12.62□□□□□ -0.39
POLR2A-209ENST00000617998 FILIP1LQ4L180 1135 aa12.62□□□□□ -0.39
POLR2A-209ENST00000617998 CCDC181Q5TID7 509 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms