RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 STK38Q15208 465 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 USPL1Q5W0Q7 1092 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 CCDC112Q8NEF3 446 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 OSBP2Q969R2 916 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 CPLX1O14810 134 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 TPM3P06753 285 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 PDIA3P30101 505 aaKnown RBP16.45■□□□□ 0.22
COL6A1-207ENST00000612273 AIFM3Q96NN9 605 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 ARHGAP23Q9P227 1491 aa16.45■□□□□ 0.22
COL6A1-207ENST00000612273 PLA2G4DQ86XP0 818 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 TDRD7Q8NHU6 1098 aaKnown RBP16.44■□□□□ 0.22
COL6A1-207ENST00000612273 FAM89AQ96GI7 184 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 CLIC4Q9Y696 253 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 CACNA1FO60840 1977 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 MAST3O60307 1309 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 ADD1P35611 737 aaKnown RBP16.44■□□□□ 0.22
COL6A1-207ENST00000612273 ZSCAN16Q9H4T2 348 aaPredicted RBP16.44■□□□□ 0.22
COL6A1-207ENST00000612273 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 PFKFB2O60825 505 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 ATG9AQ7Z3C6 839 aa16.44■□□□□ 0.22
COL6A1-207ENST00000612273 LTN1O94822 1766 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 KLF18A0A0U1RQI7 1052 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 CCDC69A6NI79 296 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 GOLGA8BA8MQT2 603 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 GPTP24298 496 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 SCARF1Q14162 830 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 PCDHA7Q9UN72 937 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 NDUFA8P51970 172 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 CCDC82Q8N4S0 544 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 KDM6AO15550 1401 aaPredicted RBP16.43■□□□□ 0.22
COL6A1-207ENST00000612273 IQCB1Q15051 598 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 STX1AQ16623 288 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 CWC25Q9NXE8 425 aaPredicted RBP16.43■□□□□ 0.22
COL6A1-207ENST00000612273 CEP126Q9P2H0 1117 aa16.43■□□□□ 0.22
COL6A1-207ENST00000612273 FOXO4P98177 505 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 DPCR1Q3MIW9 517 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 TTC39AQ5SRH9 613 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 ZBTB9Q96C00 473 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 STRN4Q9NRL3 753 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 ORC3Q9UBD5 711 aaPredicted RBP16.42■□□□□ 0.22
COL6A1-207ENST00000612273 SLIT1O75093 1534 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 NFAT5O94916 1531 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 NCBP1Q09161 790 aaKnown RBP16.42■□□□□ 0.22
COL6A1-207ENST00000612273 SNW1Q13573 536 aaKnown RBP16.42■□□□□ 0.22
COL6A1-207ENST00000612273 TSGA10IPQ3SY00 556 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 CEP135Q66GS9 1140 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 LRRC8AQ8IWT6 810 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 PLBD2Q8NHP8 589 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 C8orf76Q96K31 380 aa16.42■□□□□ 0.22
COL6A1-207ENST00000612273 LMOD1P29536 600 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-207ENST00000612273 LRP10Q7Z4F1 713 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 ILDR1Q86SU0 546 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-207ENST00000612273 INCENPQ9NQS7 918 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 FDPSP14324 419 aaKnown RBP16.41■□□□□ 0.22
COL6A1-207ENST00000612273 TOM1L2Q6ZVM7 507 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 DCAF5Q96JK2 942 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 ZNF396Q96N95 335 aaPredicted RBP16.41■□□□□ 0.22
COL6A1-207ENST00000612273 ATF3P18847 181 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 GNL2Q13823 731 aaKnown RBP16.41■□□□□ 0.22
COL6A1-207ENST00000612273 CCDC57Q2TAC2 916 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 CEP57L1Q8IYX8 460 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 MYL10Q9BUA6 226 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 RCOR1Q9UKL0 485 aa16.41■□□□□ 0.22
COL6A1-207ENST00000612273 RNF113AO15541 343 aaKnown RBP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 GTF2F1P35269 517 aaKnown RBP eCLIP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 ZAP70P43403 619 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 FAM160A1Q05DH4 1040 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 GOLGA8FQ08AF8 430 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 GOLGA8DPQ0D2H9 430 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 PTPN14Q15678 1187 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 PRC1O43663 620 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 FGAP02671 866 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 RABL6Q3YEC7 729 aaPredicted RBP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 TMC6Q7Z403 805 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 RALYLQ86SE5 291 aaKnown RBP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 FAM177A1Q8N128 213 aaPredicted RBP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 SMARCC2Q8TAQ2 1214 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 PUS7LQ9H0K6 701 aaKnown RBP16.4■□□□□ 0.22
COL6A1-207ENST00000612273 TMX1Q9H3N1 280 aa16.4■□□□□ 0.22
COL6A1-207ENST00000612273 UBE2Q2LH0YL09 131 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 EYA2O00167 538 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 SPECC1Q5M775 1068 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 ZMYM1Q5SVZ6 1142 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 SYNE3Q6ZMZ3 975 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 IFNKQ9P0W0 207 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 PRDM4Q9UKN5 801 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 KAT6BQ8WYB5 2073 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 IDH1O75874 414 aaKnown RBP16.39■□□□□ 0.21
COL6A1-207ENST00000612273 MRPS27Q92552 414 aaKnown RBP16.39■□□□□ 0.21
COL6A1-207ENST00000612273 PHKBQ93100 1093 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 ANO10Q9NW15 660 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 ZNF215Q9UL58 517 aaPredicted RBP16.39■□□□□ 0.21
COL6A1-207ENST00000612273 DHX40Q8IX18 779 aaKnown RBP16.39■□□□□ 0.21
COL6A1-207ENST00000612273 HELBQ8NG08 1087 aaPredicted RBP16.39■□□□□ 0.21
COL6A1-207ENST00000612273 TOMM22Q9NS69 142 aa16.39■□□□□ 0.21
COL6A1-207ENST00000612273 SNAP23O00161 211 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 HMGB1P09429 215 aaKnown RBP16.38■□□□□ 0.21
COL6A1-207ENST00000612273 EXOSC10Q01780 885 aaKnown RBP16.38■□□□□ 0.21
COL6A1-207ENST00000612273 MICU3Q86XE3 530 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms