RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	NBPF26	B4DH59	902 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	KIAA2012	Q0VF49	1180 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NMI	Q13287	307 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NBPF14	Q5TI25	921 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	UBE3B	Q7Z3V4	1068 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NBPF15	Q8N660	670 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	LINS1	Q8NG48	757 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	YY1AP1	Q9H869	796 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ECHDC1	Q9NTX5	307 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	AOX1	Q06278	1338 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063		A0A0D9SFI3	127 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	DDB1	Q16531	1140 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ANKRD23	Q86SG2	305 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CKAP2L	Q8IYA6	745 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	INTS4	Q96HW7	963 aa	Known RBP	13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	LMO7	Q8WWI1	1683 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	GLRX3	O76003	335 aa	Known RBP	13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SATB1	Q01826	763 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	DNAJC10	Q8IXB1	793 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	RETREG2	Q8NC44	543 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CCDC97	Q96F63	343 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	HEG1	Q9ULI3	1381 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	EP400	Q96L91	3159 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	FAM98C	Q17RN3	349 aa	Known RBP	13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	LIMCH1	Q9UPQ0	1083 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	MRVI1	Q9Y6F6	885 aa		13.65	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	HS1BP3	Q53T59	392 aa		13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	FAM182B	Q5T319	152 aa		13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	PDRG1	Q9NUG6	133 aa		13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063		A0A087WZG4	1122 aa		13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	F13A1	P00488	732 aa		13.64	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ME3	Q16798	604 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ZFYVE27	Q5T4F4	411 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CCDC183	Q5T5S1	534 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	VTI1A	Q96AJ9	217 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	RBM8A	Q9Y5S9	174 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	NEURL1B	A8MQ27	555 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CEBPZ	Q03701	1054 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	MTX1	Q13505	466 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CCDC129	Q6ZRS4	1044 aa		13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CALR3	Q96L12	384 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	NRDC	O43847	1150 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LONRF3	Q496Y0	759 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	DDX11	Q96FC9	970 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	SEC62	Q99442	399 aa	Known RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	METTL22	Q9BUU2	404 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ATG3	Q9NT62	314 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	RAI14	Q9P0K7	980 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	GOLGB1	Q14789	3259 aa	Known RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063		A0A087WWV3	80 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ALDH1L1	O75891	902 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	GCKR	Q14397	625 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	NKX1-1	Q15270	411 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	SASS6	Q6UVJ0	657 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	MSL3	Q8N5Y2	521 aa	Known RBP	13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	PYCARD	Q9ULZ3	195 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CACNA1F	O60840	1977 aa		13.62	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	KCNQ4	P56696	695 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CDC37L1	Q7L3B6	337 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CERK	Q8TCT0	537 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	KCNV2	Q8TDN2	545 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	FSD1	Q9BTV5	496 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LRRC2	Q9BYS8	371 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TPCN1	Q9ULQ1	816 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TTC41P	Q6P2S7	1318 aa		13.61	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LIG1	P18858	919 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	GPT	P24298	496 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CSPP1	Q1MSJ5	1256 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CREB3L3	Q68CJ9	461 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LUZP1	Q86V48	1076 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	MTMR6	Q9Y217	621 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CCDC171	Q6TFL3	1326 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	USP42	Q9H9J4	1324 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LARP1B	Q659C4	914 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CXorf38	Q8TB03	319 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	UBE2H	P62256	183 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TFCP2	Q12800	502 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	NECTIN1	Q15223	517 aa		13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	MEX3C	Q5U5Q3	659 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.6	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	COL16A1	Q07092	1604 aa	Predicted RBP	13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	KCNQ2	O43526	872 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	STARD3NL	O95772	234 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	HSPA1L	P34931	641 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	COL15A1	P39059	1388 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CBX1	P83916	185 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	IL17RA	Q96F46	866 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TMX4	Q9H1E5	349 aa	Predicted RBP	13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	SPATA31A1	Q5TZJ5	1347 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063		A0A0G2JLW4	131 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	SPDYE4	A6NLX3	237 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	SLC27A2	O14975	620 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	LRP10	Q7Z4F1	713 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TTC6	Q86TZ1	520 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms