RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 ZKSCAN2Q63HK3 967 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 LRP10Q7Z4F1 713 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 ZNF34Q8IZ26 560 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 SYNE4Q8N205 404 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 KIF16BQ96L93 1317 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 PPP1R9BQ96SB3 815 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 SLKQ9H2G2 1235 aaPredicted RBP8.16□□□□□ -1.1
NUP88-206ENST00000573169 GRPEL1Q9HAV7 217 aa8.16□□□□□ -1.1
NUP88-206ENST00000573169 DICER1Q9UPY3 1922 aaKnown RBP8.16□□□□□ -1.1
NUP88-206ENST00000573169 NUP98P52948 1817 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 ESPNB1AK53 854 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 NTSR2O95665 410 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 ALDH1B1P30837 517 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 IARSP41252 1262 aaKnown RBP8.15□□□□□ -1.1
NUP88-206ENST00000573169 AIMP1Q12904 312 aaKnown RBP8.15□□□□□ -1.1
NUP88-206ENST00000573169 CRY2Q49AN0 593 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 GIGYF2Q6Y7W6 1299 aaKnown RBP8.15□□□□□ -1.1
NUP88-206ENST00000573169 JMYQ8N9B5 988 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 NYXQ9GZU5 481 aa8.15□□□□□ -1.1
NUP88-206ENST00000573169 COL4A5P29400 1685 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 SNED1Q8TER0 1413 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 HOXA10P31260 410 aaPredicted RBP8.14□□□□□ -1.11
NUP88-206ENST00000573169 RAB3GAP1Q15042 981 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 HS1BP3Q53T59 392 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 COL13A1Q5TAT6 717 aaPredicted RBP8.14□□□□□ -1.11
NUP88-206ENST00000573169 DZIP1LQ8IYY4 767 aaKnown RBP8.14□□□□□ -1.11
NUP88-206ENST00000573169 RTKN2Q8IZC4 609 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 XAGE3Q8WTP9 111 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 RPGRQ92834 1020 aaKnown RBP8.14□□□□□ -1.11
NUP88-206ENST00000573169 TAF1DQ9H5J8 278 aaPredicted RBP8.14□□□□□ -1.11
NUP88-206ENST00000573169 DDX19BQ9UMR2 479 aa8.14□□□□□ -1.11
NUP88-206ENST00000573169 ERBB4Q15303 1308 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 HSP90AA1P07900 732 aaKnown RBP8.13□□□□□ -1.11
NUP88-206ENST00000573169 NUCB1Q02818 461 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 EAPPQ56P03 285 aaPredicted RBP8.13□□□□□ -1.11
NUP88-206ENST00000573169 COPS6Q7L5N1 327 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 GPIHBP1Q8IV16 184 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 HSCBQ8IWL3 235 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 DDX12PQ92771 950 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 ZBTB40Q9NUA8 1239 aa8.13□□□□□ -1.11
NUP88-206ENST00000573169 MKRN1Q9UHC7 482 aaKnown RBP8.13□□□□□ -1.11
NUP88-206ENST00000573169 FZD9O00144 591 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 CHL1O00533 1208 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 PPEF1O14829 653 aaPredicted RBP8.12□□□□□ -1.11
NUP88-206ENST00000573169 HCLS1P14317 486 aaPredicted RBP8.12□□□□□ -1.11
NUP88-206ENST00000573169 HSP90AA2PQ14568 343 aaPredicted RBP8.12□□□□□ -1.11
NUP88-206ENST00000573169 BMP2KLQ5H9B9 411 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 PPP1R42Q7Z4L9 355 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 NLRP10Q86W26 655 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 RBM17Q96I25 401 aaKnown RBP8.12□□□□□ -1.11
NUP88-206ENST00000573169 GBP4Q96PP9 640 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 CRAMP1Q96RY5 1269 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 EPAS1Q99814 870 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 UTP14AQ9BVJ6 771 aaKnown RBP8.12□□□□□ -1.11
NUP88-206ENST00000573169 PANK2Q9BZ23 570 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 BABAM1Q9NWV8 329 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 GJA3Q9Y6H8 435 aa8.12□□□□□ -1.11
NUP88-206ENST00000573169 IQCA1LA6NCM1 817 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 ITGBL1O95965 494 aaPredicted RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 HSPA1AP0DMV8 641 aaKnown RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 HSPA1BP0DMV9 641 aaKnown RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 EPHX2P34913 555 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 LMOD3Q0VAK6 560 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 CCDC173Q0VFZ6 552 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 ALDH1L2Q3SY69 923 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 PARP10Q53GL7 1025 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 SLC10A5Q5PT55 438 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 RBM26Q5T8P6 1007 aaKnown RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 MAP1SQ66K74 1059 aaPredicted RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 ATF7IPQ6VMQ6 1270 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 LDHDQ86WU2 507 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 LARGE2Q8N3Y3 721 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 NLRP3Q96P20 1036 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 PSMD1Q99460 953 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 CHMP4BQ9H444 224 aaKnown RBP8.11□□□□□ -1.11
NUP88-206ENST00000573169 DDX21Q9NR30 783 aaKnown RBP eCLIP8.11□□□□□ -1.11
NUP88-206ENST00000573169 CHPF2Q9P2E5 772 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 HACL1Q9UJ83 578 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 RIC1Q4ADV7 1423 aa8.11□□□□□ -1.11
NUP88-206ENST00000573169 ABCC4O15439 1325 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 PASKQ96RG2 1323 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 HOXB3P14651 431 aaPredicted RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 EIF6P56537 245 aaKnown RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 FMR1Q06787 632 aaKnown RBP eCLIP8.1□□□□□ -1.11
NUP88-206ENST00000573169 TCIRG1Q13488 830 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 AOC3Q16853 763 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 CC2D2BQ6DHV5 1058 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 GPC2Q8N158 579 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 ZC3H15Q8WU90 426 aaKnown RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 JDP2Q8WYK2 163 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 TNPO1Q92973 898 aaKnown RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 NAP1L5Q96NT1 182 aaPredicted RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 KIF2CQ99661 725 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 PDCL3Q9H2J4 239 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 TRMT112Q9UI30 125 aaKnown RBP8.1□□□□□ -1.11
NUP88-206ENST00000573169 TNNQ9UQP3 1299 aa8.1□□□□□ -1.11
NUP88-206ENST00000573169 LTBP1Q14766 1721 aa8.09□□□□□ -1.11
NUP88-206ENST00000573169 SCN4AP35499 1836 aa8.09□□□□□ -1.11
NUP88-206ENST00000573169 ATP5J2-PTCD1G3V325 749 aa8.09□□□□□ -1.11
NUP88-206ENST00000573169 IPO8O15397 1037 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms