RNA–Protein interactions for RNA: ENST00000554956.5

PSMC6-208, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-208	ENST00000554956	POLR3D	P05423	398 aa	Predicted RBP	9.08	□□□□□ -0.96
PSMC6-208	ENST00000554956	KCTD17	Q8N5Z5	321 aa		9.08	□□□□□ -0.96
PSMC6-208	ENST00000554956	TMC1	Q8TDI8	760 aa		9.08	□□□□□ -0.96
PSMC6-208	ENST00000554956	TTC9	Q92623	222 aa		9.08	□□□□□ -0.96
PSMC6-208	ENST00000554956	SPACA7	Q96KW9	195 aa		9.08	□□□□□ -0.96
PSMC6-208	ENST00000554956	TOPBP1	Q92547	1522 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	IGHA2	P01877	340 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	ORC1	Q13415	861 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	USPL1	Q5W0Q7	1092 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	CEP135	Q66GS9	1140 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	HHIP	Q96QV1	700 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	LATS2	Q9NRM7	1088 aa		9.07	□□□□□ -0.96
PSMC6-208	ENST00000554956	ITGB2	P05107	769 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	MAPK1	P28482	360 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	BAG6	P46379	1132 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	MSL1	Q68DK7	614 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	WFDC8	Q8IUA0	241 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	LACRT	Q9GZZ8	138 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	ZFYVE28	Q9HCC9	887 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956	IFT140	Q96RY7	1462 aa		9.06	□□□□□ -0.96
PSMC6-208	ENST00000554956		A0A0A0MRY4	1105 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	PDE3B	Q13370	1112 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	ILDR2	Q71H61	639 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	IL22RA1	Q8N6P7	574 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	CITED4	Q96RK1	184 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	RBCK1	Q9BYM8	510 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	PBX4	Q9BYU1	374 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	NIF3L1	Q9GZT8	377 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	DCTN4	Q9UJW0	460 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	AMOTL2	Q9Y2J4	779 aa		9.05	□□□□□ -0.96
PSMC6-208	ENST00000554956	SPDYE3	A6NKU9	549 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	SMNDC1	O75940	238 aa	Known RBP eCLIP	9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	SPATA31C1	P0DKV0	1188 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	TRIM28	Q13263	835 aa	Known RBP	9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	PLA2G4E	Q3MJ16	856 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	PRRT3	Q5FWE3	981 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	TMC7	Q7Z402	723 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	DZANK1	Q9NVP4	752 aa		9.04	□□□□□ -0.96
PSMC6-208	ENST00000554956	AQR	O60306	1485 aa	Known RBP eCLIP	9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	NFKBIE	O00221	500 aa		9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	GRIK4	Q16099	956 aa		9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	PMEPA1	Q969W9	287 aa		9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	POP1	Q99575	1024 aa	Known RBP	9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	ZKSCAN3	Q9BRR0	538 aa		9.03	□□□□□ -0.96
PSMC6-208	ENST00000554956	CHRNA4	P43681	627 aa		9.02	□□□□□ -0.97
PSMC6-208	ENST00000554956	PEAR1	Q5VY43	1037 aa	Predicted RBP	9.02	□□□□□ -0.97
PSMC6-208	ENST00000554956	ALYREF	Q86V81	257 aa	Known RBP	9.02	□□□□□ -0.97
PSMC6-208	ENST00000554956	FMR1NB	Q8N0W7	255 aa	Predicted RBP	9.02	□□□□□ -0.97
PSMC6-208	ENST00000554956	OSMR	Q99650	979 aa		9.02	□□□□□ -0.97
PSMC6-208	ENST00000554956	PATL2	C9JE40	543 aa	Known RBP	9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	DEAF1	O75398	565 aa	Predicted RBP	9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	EDN3	P14138	238 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	CDC25B	P30305	580 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	RAC1	P63000	192 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	GPAT2	Q6NUI2	795 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	TXNDC11	Q6PKC3	985 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	CD163	Q86VB7	1156 aa		9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	SH2B1	Q9NRF2	756 aa	Predicted RBP	9.01	□□□□□ -0.97
PSMC6-208	ENST00000554956	C1QTNF9B	B2RNN3	333 aa		9	□□□□□ -0.97
PSMC6-208	ENST00000554956	PDE2A	O00408	941 aa	Predicted RBP	9	□□□□□ -0.97
PSMC6-208	ENST00000554956	SHISA2	Q6UWI4	295 aa		9	□□□□□ -0.97
PSMC6-208	ENST00000554956	DMRTB1	Q96MA1	342 aa		9	□□□□□ -0.97
PSMC6-208	ENST00000554956	EIF1AY	O14602	144 aa	Known RBP	8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	CPNE3	O75131	537 aa	Known RBP	8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	EPHA1	P21709	976 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	CDC27	P30260	824 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	CYB5RL	Q6IPT4	315 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	GALNT12	Q8IXK2	581 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	RAD54L2	Q9Y4B4	1467 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	ARHGEF11	O15085	1522 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	DNMBP	Q6XZF7	1577 aa		8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	TDRD9	Q8NDG6	1382 aa	Known RBP	8.99	□□□□□ -0.97
PSMC6-208	ENST00000554956	POLA1	P09884	1462 aa	Predicted RBP	8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	LINC01387	J3KSC0	135 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	ELN	P15502	786 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	SELP	P16109	830 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	PTPRA	P18433	802 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	SND1	Q7KZF4	910 aa	Known RBP eCLIP	8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	ALKBH8	Q96BT7	664 aa	Known RBP	8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	CSRNP1	Q96S65	589 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	NPHS2	Q9NP85	383 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	RIMBP3C	A6NJZ7	1639 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	RIMBP3B	A6NNM3	1639 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956	RIMBP3	Q9UFD9	1639 aa		8.98	□□□□□ -0.97
PSMC6-208	ENST00000554956		A0A1W2PP55	124 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	METTL12	A8MUP2	240 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	NEFL	P07196	543 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	SETDB1	Q15047	1291 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	FBXO11	Q86XK2	927 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	DTWD1	Q8N5C7	304 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	TMEM102	Q8N9M5	508 aa	Predicted RBP	8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	NXPE3	Q969Y0	559 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	PPME1	Q9Y570	386 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	ABCC8	Q09428	1581 aa		8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	TARBP1	Q13395	1621 aa	Known RBP	8.97	□□□□□ -0.97
PSMC6-208	ENST00000554956	EIF4G3	O43432	1585 aa	Known RBP	8.96	□□□□□ -0.97
PSMC6-208	ENST00000554956	TREH	O43280	583 aa		8.96	□□□□□ -0.98
PSMC6-208	ENST00000554956	APBA3	O96018	575 aa		8.96	□□□□□ -0.98
PSMC6-208	ENST00000554956	DSC3	Q14574	896 aa		8.96	□□□□□ -0.98
PSMC6-208	ENST00000554956	CARD10	Q9BWT7	1032 aa		8.96	□□□□□ -0.98

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms