RNA–Protein interactions for RNA: ENST00000554956.5

PSMC6-208, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-208	ENST00000554956	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.92	■■■□□ 2.06
PSMC6-208	ENST00000554956	CHIC1	Q5VXU3	224 aa		27.14	■■□□□ 1.94
PSMC6-208	ENST00000554956	PHF23	Q9BUL5	403 aa	Predicted RBP	23.92	■■□□□ 1.42
PSMC6-208	ENST00000554956	SENP3	Q9H4L4	574 aa	Predicted RBP	23.6	■■□□□ 1.37
PSMC6-208	ENST00000554956	FOXD1	Q16676	465 aa		21.98	■■□□□ 1.11
PSMC6-208	ENST00000554956	PLPPR3	Q6T4P5	718 aa		21.97	■■□□□ 1.11
PSMC6-208	ENST00000554956	PPP6R1	Q9UPN7	881 aa		21.14	■□□□□ 0.97
PSMC6-208	ENST00000554956	ADRA2B	P18089	450 aa		21.11	■□□□□ 0.97
PSMC6-208	ENST00000554956	PIAS4	Q8N2W9	510 aa	Predicted RBP	20.7	■□□□□ 0.9
PSMC6-208	ENST00000554956	MSH5	O43196	834 aa		20.21	■□□□□ 0.83
PSMC6-208	ENST00000554956	PPP4R3CP	Q6ZMV5	832 aa		19.4	■□□□□ 0.7
PSMC6-208	ENST00000554956	MAPK8IP2	Q13387	824 aa	Predicted RBP	19.19	■□□□□ 0.66
PSMC6-208	ENST00000554956	SCAF1	Q9H7N4	1312 aa	Known RBP	19.17	■□□□□ 0.66
PSMC6-208	ENST00000554956	KCNA4	P22459	653 aa		18.93	■□□□□ 0.62
PSMC6-208	ENST00000554956	DMRT2	Q9Y5R5	561 aa		18.85	■□□□□ 0.61
PSMC6-208	ENST00000554956	CNKSR2	Q8WXI2	1034 aa		18.82	■□□□□ 0.6
PSMC6-208	ENST00000554956	NCBP3	Q53F19	620 aa	Known RBP	18.79	■□□□□ 0.6
PSMC6-208	ENST00000554956	NPM3	O75607	178 aa	Known RBP	18.61	■□□□□ 0.57
PSMC6-208	ENST00000554956	POTED	Q86YR6	584 aa		18.59	■□□□□ 0.57
PSMC6-208	ENST00000554956	RNF216	Q9NWF9	866 aa	Predicted RBP	18.47	■□□□□ 0.55
PSMC6-208	ENST00000554956	HOXD11	P31277	338 aa	Predicted RBP	18.42	■□□□□ 0.54
PSMC6-208	ENST00000554956	DCAF8L1	A6NGE4	600 aa		18.09	■□□□□ 0.49
PSMC6-208	ENST00000554956	SLC4A1AP	Q9BWU0	796 aa	Known RBP	17.97	■□□□□ 0.47
PSMC6-208	ENST00000554956	DNAJC5B	Q9UF47	199 aa		17.96	■□□□□ 0.47
PSMC6-208	ENST00000554956	SLC4A2	P04920	1241 aa		17.61	■□□□□ 0.41
PSMC6-208	ENST00000554956	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	17.58	■□□□□ 0.4
PSMC6-208	ENST00000554956	EHMT2	Q96KQ7	1210 aa		17.46	■□□□□ 0.39
PSMC6-208	ENST00000554956	ZBTB22	O15209	634 aa		17.45	■□□□□ 0.38
PSMC6-208	ENST00000554956	FOXD4L1	Q9NU39	408 aa		17.38	■□□□□ 0.37
PSMC6-208	ENST00000554956	RNF39	Q9H2S5	420 aa		17.36	■□□□□ 0.37
PSMC6-208	ENST00000554956		U3KPZ7	1027 aa	Predicted RBP	17.32	■□□□□ 0.36
PSMC6-208	ENST00000554956	CSRNP3	Q8WYN3	585 aa		17.25	■□□□□ 0.35
PSMC6-208	ENST00000554956	MYCN	P04198	464 aa	Predicted RBP	17.16	■□□□□ 0.34
PSMC6-208	ENST00000554956	C1QBP	Q07021	282 aa	Known RBP	17.09	■□□□□ 0.33
PSMC6-208	ENST00000554956	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	16.96	■□□□□ 0.31
PSMC6-208	ENST00000554956	HNRNPUL2	Q1KMD3	747 aa	Known RBP	16.96	■□□□□ 0.31
PSMC6-208	ENST00000554956	CACNB1	Q02641	598 aa	Predicted RBP	16.95	■□□□□ 0.3
PSMC6-208	ENST00000554956	SAMD1	Q6SPF0	538 aa	Predicted RBP	16.93	■□□□□ 0.3
PSMC6-208	ENST00000554956	SPINK5	Q9NQ38	1064 aa	Predicted RBP	16.89	■□□□□ 0.29
PSMC6-208	ENST00000554956	ATF5	Q9Y2D1	282 aa	Predicted RBP	16.8	■□□□□ 0.28
PSMC6-208	ENST00000554956	CAPN15	O75808	1086 aa		16.78	■□□□□ 0.28
PSMC6-208	ENST00000554956	APLP2	Q06481	763 aa		16.78	■□□□□ 0.28
PSMC6-208	ENST00000554956	ATXN8OS	P0DMR3	200 aa		16.7	■□□□□ 0.26
PSMC6-208	ENST00000554956	TRH	P20396	242 aa	Predicted RBP	16.7	■□□□□ 0.26
PSMC6-208	ENST00000554956	ZNF219	Q9P2Y4	722 aa	Predicted RBP	16.62	■□□□□ 0.25
PSMC6-208	ENST00000554956	DSG3	P32926	999 aa		16.51	■□□□□ 0.23
PSMC6-208	ENST00000554956	ABCB7	O75027	752 aa		16.5	■□□□□ 0.23
PSMC6-208	ENST00000554956	POLA2	Q14181	598 aa		16.39	■□□□□ 0.21
PSMC6-208	ENST00000554956	MKRN4P	Q13434	485 aa	Predicted RBP	16.05	■□□□□ 0.16
PSMC6-208	ENST00000554956	ZBTB12	Q9Y330	459 aa	Predicted RBP	16.03	■□□□□ 0.16
PSMC6-208	ENST00000554956	FBLN2	P98095	1184 aa		15.98	■□□□□ 0.15
PSMC6-208	ENST00000554956	OSCAR	Q8IYS5	282 aa		15.89	■□□□□ 0.13
PSMC6-208	ENST00000554956	RBM42	Q9BTD8	480 aa	Known RBP	15.66	■□□□□ 0.1
PSMC6-208	ENST00000554956	SPDYE2B	A6NHP3	402 aa		15.63	■□□□□ 0.09
PSMC6-208	ENST00000554956	SPDYE6	P0CI01	402 aa		15.63	■□□□□ 0.09
PSMC6-208	ENST00000554956	SPDYE2	Q495Y8	402 aa		15.63	■□□□□ 0.09
PSMC6-208	ENST00000554956	SPDYE4	A6NLX3	237 aa		15.6	■□□□□ 0.09
PSMC6-208	ENST00000554956	FKBP8	Q14318	412 aa		15.6	■□□□□ 0.09
PSMC6-208	ENST00000554956	ZNF692	Q9BU19	519 aa	Predicted RBP	15.59	■□□□□ 0.09
PSMC6-208	ENST00000554956	SSUH2	Q9Y2M2	353 aa		15.54	■□□□□ 0.08
PSMC6-208	ENST00000554956	AKT1S1	Q96B36	256 aa		15.47	■□□□□ 0.07
PSMC6-208	ENST00000554956	PABPN1	Q86U42	306 aa	Known RBP eCLIP	15.41	■□□□□ 0.06
PSMC6-208	ENST00000554956	REM2	Q8IYK8	340 aa	Predicted RBP	15.37	■□□□□ 0.05
PSMC6-208	ENST00000554956	PROM2	Q8N271	834 aa		15.32	■□□□□ 0.04
PSMC6-208	ENST00000554956	PITPNM1	O00562	1244 aa		15.22	■□□□□ 0.03
PSMC6-208	ENST00000554956	SPDYE1	Q8NFV5	336 aa	Predicted RBP	15.19	■□□□□ 0.02
PSMC6-208	ENST00000554956	CLEC11A	Q9Y240	323 aa		15.18	■□□□□ 0.02
PSMC6-208	ENST00000554956	CHRDL2	Q6WN34	429 aa		15.1	■□□□□ 0.01
PSMC6-208	ENST00000554956	STAG3	Q9UJ98	1225 aa		15.04	■□□□□ -0
PSMC6-208	ENST00000554956	PRR29	P0C7W0	189 aa		15	□□□□□ -0.01
PSMC6-208	ENST00000554956	FBXO3	Q9UK99	471 aa		14.95	□□□□□ -0.02
PSMC6-208	ENST00000554956	FXR2	P51116	673 aa	Known RBP eCLIP	14.91	□□□□□ -0.02
PSMC6-208	ENST00000554956	PIP4P2	Q8N4L2	257 aa		14.91	□□□□□ -0.02
PSMC6-208	ENST00000554956	CHADL	Q6NUI6	762 aa		14.86	□□□□□ -0.03
PSMC6-208	ENST00000554956	VASP	P50552	380 aa	Predicted RBP	14.83	□□□□□ -0.04
PSMC6-208	ENST00000554956	CREBZF	Q9NS37	354 aa		14.83	□□□□□ -0.04
PSMC6-208	ENST00000554956	PRKAR2A	P13861	404 aa	Known RBP	14.82	□□□□□ -0.04
PSMC6-208	ENST00000554956	MIER1	Q8N108	512 aa		14.79	□□□□□ -0.04
PSMC6-208	ENST00000554956	PLCD3	Q8N3E9	789 aa		14.77	□□□□□ -0.05
PSMC6-208	ENST00000554956	POTEH	Q6S545	545 aa		14.69	□□□□□ -0.06
PSMC6-208	ENST00000554956	MNX1	P50219	401 aa	Predicted RBP	14.67	□□□□□ -0.06
PSMC6-208	ENST00000554956	PLEKHG5	O94827	1062 aa		14.65	□□□□□ -0.06
PSMC6-208	ENST00000554956	IFNLR1	Q8IU57	520 aa	Predicted RBP	14.65	□□□□□ -0.06
PSMC6-208	ENST00000554956	FARP1	Q9Y4F1	1045 aa	Predicted RBP	14.65	□□□□□ -0.06
PSMC6-208	ENST00000554956	KLHL34	Q8N239	644 aa		14.58	□□□□□ -0.08
PSMC6-208	ENST00000554956	ZBTB47	Q9UFB7	747 aa	Predicted RBP	14.53	□□□□□ -0.08
PSMC6-208	ENST00000554956	NPM1	P06748	294 aa	Known RBP eCLIP	14.5	□□□□□ -0.09
PSMC6-208	ENST00000554956	NUBP1	P53384	320 aa		14.44	□□□□□ -0.1
PSMC6-208	ENST00000554956	SPOCK2	Q92563	424 aa		14.44	□□□□□ -0.1
PSMC6-208	ENST00000554956	HAX1	O00165	279 aa		14.43	□□□□□ -0.1
PSMC6-208	ENST00000554956	RASEF	Q8IZ41	740 aa		14.43	□□□□□ -0.1
PSMC6-208	ENST00000554956	C19orf67	A6NJJ6	358 aa		14.41	□□□□□ -0.1
PSMC6-208	ENST00000554956	CD44	P16070	742 aa	Known RBP	14.39	□□□□□ -0.11
PSMC6-208	ENST00000554956	EVX2	Q03828	476 aa		14.37	□□□□□ -0.11
PSMC6-208	ENST00000554956	TSPYL2	Q9H2G4	693 aa	Predicted RBP	14.35	□□□□□ -0.11
PSMC6-208	ENST00000554956	FAM212A	Q96EL1	285 aa		14.3	□□□□□ -0.12
PSMC6-208	ENST00000554956	ZRANB1	Q9UGI0	708 aa		14.3	□□□□□ -0.12
PSMC6-208	ENST00000554956	PAK3	O75914	559 aa	Predicted RBP	14.28	□□□□□ -0.12
PSMC6-208	ENST00000554956	DCAF8	Q5TAQ9	597 aa		14.28	□□□□□ -0.12
PSMC6-208	ENST00000554956	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.26	□□□□□ -0.13

Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms