RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 LTBP3Q9NS15 1303 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 RNF223E7ERA6 249 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 ADAM23O75077 832 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 COL9A1P20849 921 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 TM4SF1P30408 202 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 RPIAP49247 311 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 RHBDL3P58872 404 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 DSG2Q14126 1118 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC184Q52MB2 194 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 HSP90AB2PQ58FF8 381 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC181Q5TID7 509 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 SND1Q7KZF4 910 aaKnown RBP eCLIP3.43□□□□□ -1.86
PRPF39-206ENST00000554429 EPAS1Q99814 870 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 TOR4AQ9NXH8 423 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 POLKQ9UBT6 870 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 NPC1L1Q9UHC9 1359 aa3.43□□□□□ -1.86
PRPF39-206ENST00000554429 DHX16O60231 1041 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 EVI5O60447 810 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 GYS1P13807 737 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 TCF3P15923 654 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC96Q2M329 555 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 EMID1Q96A84 441 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 KLRG1Q96E93 195 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 SLC4A9Q96Q91 983 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 EYA1Q99502 592 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 TMOD3Q9NYL9 352 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 DACH1Q9UI36 760 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 COL3A1P02461 1466 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 USP42Q9H9J4 1324 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 RIC1Q4ADV7 1423 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 TRIM66O15016 1216 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 EPB41L2O43491 1005 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 ZPR1O75312 459 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 RRS1Q15050 365 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 TRAPPC3LQ5T215 181 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 SOS1Q07889 1333 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 RBM47A0AV96 593 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 TTC36A6NLP5 189 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 ERCC3P19447 782 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 KCNA1Q09470 495 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 SEMA3FQ13275 785 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 EIF4A2Q14240 407 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 DPH6Q7L8W6 267 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 ZNF830Q96NB3 372 aaPredicted RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 GGNBP2Q9H3C7 697 aa3.42□□□□□ -1.86
PRPF39-206ENST00000554429 RTCBQ9Y3I0 505 aaKnown RBP3.42□□□□□ -1.86
PRPF39-206ENST00000554429 POLRMTO00411 1230 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 MMP10P09238 476 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 KCNQ4P56696 695 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 TSR1Q2NL82 804 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 PLEKHO1Q53GL0 409 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 LIAT1Q6ZQX7 453 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 CYP4X1Q8N118 509 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 ATL2Q8NHH9 583 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 ARHGEF1Q92888 912 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 LTV1Q96GA3 475 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 ASAP1Q9ULH1 1129 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 SUPT16HQ9Y5B9 1047 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 KDM3BQ7LBC6 1761 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 KDM2BQ8NHM5 1336 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 TRPM7Q96QT4 1865 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 CCDC194A0A1B0GVG4 234 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 GOLGA6CA6NDK9 693 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 GOLGA6BA6NDN3 693 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 GNPATO15228 680 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 WDHD1O75717 1129 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 GOLGA6DP0CG33 693 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 SNRPBP14678 240 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 ATP6V1AP38606 617 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 PRELPP51888 382 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 MSL1Q68DK7 614 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 ZNF280DQ6N043 979 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 INTS5Q6P9B9 1019 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 CLEC4GQ6UXB4 293 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 MPRIPQ6WCQ1 1025 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 NBPF11Q86T75 865 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 USHBP1Q8N6Y0 703 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 SYTL4Q96C24 671 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 METTL14Q9HCE5 456 aaKnown RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 GOLGA6AQ9NYA3 693 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 PKD2L1Q9P0L9 805 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 PIM2Q9P1W9 311 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 SEPT9Q9UHD8 586 aaPredicted RBP3.41□□□□□ -1.86
PRPF39-206ENST00000554429 EMILIN1Q9Y6C2 1016 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 SNED1Q8TER0 1413 aa3.41□□□□□ -1.86
PRPF39-206ENST00000554429 LAMB1P07942 1786 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 U2SURPO15042 1029 aaKnown RBP3.4□□□□□ -1.86
PRPF39-206ENST00000554429 DPEP1P16444 411 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 MCCD1P59942 119 aaPredicted RBP3.4□□□□□ -1.86
PRPF39-206ENST00000554429 LMOD3Q0VAK6 560 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 DNAJC14Q6Y2X3 702 aaPredicted RBP3.4□□□□□ -1.86
PRPF39-206ENST00000554429 SMC1BQ8NDV3 1235 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 NKX2-3Q8TAU0 364 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 UBXN4Q92575 508 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 PARP3Q9Y6F1 533 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 ANKRD36CQ5JPF3 1778 aa3.4□□□□□ -1.86
PRPF39-206ENST00000554429 TNFRSF10AO00220 468 aa3.4□□□□□ -1.87
PRPF39-206ENST00000554429 ANP32CO43423 234 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms