RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 GTF2A1LQ9UNN4 478 aa5.03□□□□□ -1.6
BRCA1-220ENST00000492859 SHTN1A0MZ66 631 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 KLHL33A6NCF5 533 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 A6NCN8 305 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 BOLA2-SMG1P6H3BVE0 249 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 CDC45O75419 566 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 IPO7O95373 1038 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PDE3BQ13370 1112 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PPP2R5BQ15173 497 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 FXNQ16595 210 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 ECM1Q16610 540 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PRPF38BQ5VTL8 546 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PPP4R3AQ6IN85 833 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PADI6Q6TGC4 694 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 METTL3Q86U44 580 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 RASSF3Q86WH2 238 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 ZSCAN29Q8IWY8 852 aaPredicted RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 PHC3Q8NDX5 983 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 SMCR8Q8TEV9 937 aaPredicted RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 NUDT16Q96DE0 195 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 ZNF396Q96N95 335 aaPredicted RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 TSPY26PQ9H489 355 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 SH3GLB2Q9NR46 395 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 CHCHD3Q9NX63 227 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 WBP1LQ9NX94 342 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 DCTN4Q9UJW0 460 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 DAAM1Q9Y4D1 1078 aa5.02□□□□□ -1.61
BRCA1-220ENST00000492859 CFAP65Q6ZU64 1925 aaKnown RBP5.02□□□□□ -1.61
BRCA1-220ENST00000492859 H3BRB1 525 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 PIP5K1CO60331 668 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 FCHSD2O94868 740 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 GLULP15104 373 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 EPB42P16452 691 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ATP2B4P23634 1241 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ADD2P35612 726 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 EPHB1P54762 984 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 SNX16P57768 344 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 SFSWAPQ12872 951 aaKnown RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ZNF211Q13398 564 aaPredicted RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 TMED1Q13445 227 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 HLTFQ14527 1009 aaKnown RBP eCLIP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ZNF449Q6P9G9 518 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 KIAA0907Q7Z7F0 614 aaPredicted RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 CPXCR1Q8N123 301 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ZNF713Q8N859 430 aaPredicted RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 TTC8Q8TAM2 541 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 CLP1Q92989 425 aaKnown RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 SH3KBP1Q96B97 665 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 CHMP4CQ96CF2 233 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 SPAG5Q96R06 1193 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 FAM167BQ9BTA0 163 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 TRIM6Q9C030 488 aaPredicted RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 ABCG4Q9H172 646 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 TUT1Q9H6E5 874 aaKnown RBP5.01□□□□□ -1.61
BRCA1-220ENST00000492859 TBK1Q9UHD2 729 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 NDUFB9Q9Y6M9 179 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 IL16Q14005 1332 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 FANCIQ9NVI1 1328 aa5.01□□□□□ -1.61
BRCA1-220ENST00000492859 SOWAHBA6NEL2 793 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 ATP9BO43861 1147 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 PRMT3O60678 531 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 BBOX1O75936 387 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 KIF20AO95235 890 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 GYS1P13807 737 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 ENPP1P22413 925 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 SARSP49591 514 aaKnown RBP5□□□□□ -1.61
BRCA1-220ENST00000492859 RACK1P63244 317 aaKnown RBP5□□□□□ -1.61
BRCA1-220ENST00000492859 NUCB1Q02818 461 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 CCDC15Q0P6D6 951 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 ESCO1Q5FWF5 840 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 CT47A1Q5JQC4 288 aaPredicted RBP5□□□□□ -1.61
BRCA1-220ENST00000492859 SLC4A10Q6U841 1118 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 NUDT18Q6ZVK8 323 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 STAG2Q8N3U4 1231 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 NKAIN3Q8N8D7 197 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 ANKRD42Q8N9B4 389 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 ANKK1Q8NFD2 765 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 FLCNQ8NFG4 579 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 RPGRQ92834 1020 aaKnown RBP5□□□□□ -1.61
BRCA1-220ENST00000492859 TATDN2Q93075 761 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 TRMT2BQ96GJ1 504 aaKnown RBP5□□□□□ -1.61
BRCA1-220ENST00000492859 PHOX2BQ99453 314 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 MKS1Q9NXB0 559 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 PNMA3Q9UL41 463 aa5□□□□□ -1.61
BRCA1-220ENST00000492859 H0Y3Z8 333 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 SNX2O60749 519 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 RHOBTB3O94955 611 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 ABL1P00519 1130 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 CCDC172P0C7W6 258 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 POU3F3P20264 500 aaPredicted RBP4.99□□□□□ -1.61
BRCA1-220ENST00000492859 IL4RP24394 825 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 STIP1P31948 543 aaKnown RBP4.99□□□□□ -1.61
BRCA1-220ENST00000492859 BPIFB3P59826 476 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 RASA3Q14644 834 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 FAM98CQ17RN3 349 aaKnown RBP4.99□□□□□ -1.61
BRCA1-220ENST00000492859 AMOTQ4VCS5 1084 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 PARP10Q53GL7 1025 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 COBLL1Q53SF7 1204 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 SLC10A5Q5PT55 438 aa4.99□□□□□ -1.61
BRCA1-220ENST00000492859 AGAP9Q5VTM2 703 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms