RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 HDGFL1Q5TGJ6 251 aa9.23□□□□□ -0.93
VPS50-215ENST00000480943 USP21Q9UK80 565 aa9.23□□□□□ -0.93
VPS50-215ENST00000480943 EID1Q9Y6B2 187 aa9.23□□□□□ -0.93
VPS50-215ENST00000480943 GJA3Q9Y6H8 435 aa9.23□□□□□ -0.93
VPS50-215ENST00000480943 CLTCL1P53675 1640 aa9.23□□□□□ -0.93
VPS50-215ENST00000480943 NAIPQ13075 1403 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 NWD1Q149M9 1564 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 A0A1W2PNR3 127 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 USP17L5A8MUK1 530 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 INHAP05111 366 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 SLC52A1Q9NWF4 448 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 NOD1Q9Y239 953 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 ZFYVE9O95405 1425 aa9.22□□□□□ -0.93
VPS50-215ENST00000480943 ATP4AP20648 1035 aa9.21□□□□□ -0.94
VPS50-215ENST00000480943 DEPDC4Q8N2C3 294 aa9.21□□□□□ -0.94
VPS50-215ENST00000480943 FNBP4Q8N3X1 1017 aaPredicted RBP9.21□□□□□ -0.94
VPS50-215ENST00000480943 KRTAP4-11Q9BYQ6 195 aa9.21□□□□□ -0.94
VPS50-215ENST00000480943 RIMS2Q9UQ26 1411 aa9.21□□□□□ -0.94
VPS50-215ENST00000480943 ALBP02768 609 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 SSTR4P31391 388 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 GTF2IP78347 998 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 NBPF1Q3BBV0 1214 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 AIDAQ96BJ3 306 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 UCN2Q96RP3 112 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 TRPM2O94759 1503 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 DIP2AQ14689 1571 aa9.2□□□□□ -0.94
VPS50-215ENST00000480943 A0A0A0MRY4 1105 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 CD97P48960 835 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 PSME1Q06323 249 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 SAMD5Q5TGI4 173 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 GLMNQ92990 594 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 TNFRSF25Q93038 417 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 SERTAD1Q9UHV2 236 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 HCN2Q9UL51 889 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 PCDHGA11Q9Y5H2 935 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 HFM1A2PYH4 1435 aa9.19□□□□□ -0.94
VPS50-215ENST00000480943 A6NJR5 290 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 TMEM229AB2RXF0 380 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 PPLO60437 1756 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 TATP17735 454 aaPredicted RBP9.18□□□□□ -0.94
VPS50-215ENST00000480943 GP2P55259 537 aaKnown RBP9.18□□□□□ -0.94
VPS50-215ENST00000480943 PIP4K2BP78356 416 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 PLEKHG1Q9ULL1 1385 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 STARD13Q9Y3M8 1113 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 NRXN3Q9Y4C0 1643 aa9.18□□□□□ -0.94
VPS50-215ENST00000480943 NKTRP30414 1462 aaKnown RBP9.17□□□□□ -0.94
VPS50-215ENST00000480943 USP17L3A6NCW0 530 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 USP17L4A6NCW7 530 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 ATP9BO43861 1147 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 TOM1O60784 492 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 LILRB5O75023 590 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 PPP1R15AO75807 674 aaPredicted RBP9.17□□□□□ -0.94
VPS50-215ENST00000480943 SMTNP53814 917 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 NEUROD1Q13562 356 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 USP17L2Q6R6M4 530 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 USP17L1Q7RTZ2 530 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 PLEKHM2Q8IWE5 1019 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 SLC26A8Q96RN1 970 aa9.17□□□□□ -0.94
VPS50-215ENST00000480943 NIFKQ9BYG3 293 aaKnown RBP9.17□□□□□ -0.94
VPS50-215ENST00000480943 OAS3Q9Y6K5 1087 aaKnown RBP9.17□□□□□ -0.94
VPS50-215ENST00000480943 C8orf86Q6ZUL3 223 aa9.16□□□□□ -0.94
VPS50-215ENST00000480943 TRIM50Q86XT4 487 aa9.16□□□□□ -0.94
VPS50-215ENST00000480943 ROBO1Q9Y6N7 1651 aa9.16□□□□□ -0.94
VPS50-215ENST00000480943 NEXMIFQ5QGS0 1516 aa9.15□□□□□ -0.94
VPS50-215ENST00000480943 SETD1AO15047 1707 aaKnown RBP9.15□□□□□ -0.94
VPS50-215ENST00000480943 XRN1Q8IZH2 1706 aaKnown RBP9.15□□□□□ -0.94
VPS50-215ENST00000480943 IFT172Q9UG01 1749 aa9.15□□□□□ -0.94
VPS50-215ENST00000480943 SLC4A9Q96Q91 983 aa9.15□□□□□ -0.94
VPS50-215ENST00000480943 ADAMTS13Q76LX8 1427 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.14□□□□□ -0.95
VPS50-215ENST00000480943 TMEM94Q12767 1356 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 DISP3Q9P2K9 1392 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 BACH1O14867 736 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 EFSO43281 561 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 KCNA6P17658 529 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 HSPA1LP34931 641 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 SHISA2Q6UWI4 295 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS50-215ENST00000480943 KRTAP4-5Q9BYR2 181 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 MED1Q15648 1581 aaPredicted RBP9.14□□□□□ -0.95
VPS50-215ENST00000480943 SETBP1Q9Y6X0 1596 aa9.14□□□□□ -0.95
VPS50-215ENST00000480943 A6NJY4 79 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 ADH7P40394 386 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 ATP1A2P50993 1020 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 MTFR1Q15390 333 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 PRR23CQ6ZRP0 262 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS50-215ENST00000480943 CALR3Q96L12 384 aaKnown RBP9.13□□□□□ -0.95
VPS50-215ENST00000480943 ZNF358Q9NW07 568 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 PHLPP1O60346 1717 aa9.13□□□□□ -0.95
VPS50-215ENST00000480943 ZNF326Q5BKZ1 582 aaKnown RBP9.12□□□□□ -0.95
VPS50-215ENST00000480943 ZDHHC3Q9NYG2 299 aa9.12□□□□□ -0.95
VPS50-215ENST00000480943 NALCNQ8IZF0 1738 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 CDK2AP1O14519 115 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 CLDN10P78369 228 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 C20orf204Q6ZNR8 217 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 TPCN2Q8NHX9 752 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 STRN4Q9NRL3 753 aa9.11□□□□□ -0.95
VPS50-215ENST00000480943 MKRN1Q9UHC7 482 aaKnown RBP9.11□□□□□ -0.95
VPS50-215ENST00000480943 IQSEC3Q9UPP2 1182 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms