RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PNNQ9H307 717 aaKnown RBP8.18□□□□□ -1.1
SF3B1-209ENST00000479532 GLI3P10071 1580 aa8.18□□□□□ -1.1
SF3B1-209ENST00000479532 IL2RBP14784 551 aa8.17□□□□□ -1.1
SF3B1-209ENST00000479532 TATP17735 454 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-209ENST00000479532 ITGA6P23229 1130 aa8.17□□□□□ -1.1
SF3B1-209ENST00000479532 IL13P35225 146 aa8.17□□□□□ -1.1
SF3B1-209ENST00000479532 CNTNAP5Q8WYK1 1306 aa8.17□□□□□ -1.1
SF3B1-209ENST00000479532 COL3A1P02461 1466 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-209ENST00000479532 PROCP04070 461 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 CELA2BP08218 269 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-209ENST00000479532 RGPD1P0DJD0 1748 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 U2AF1L5P0DN76 240 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-209ENST00000479532 GRM5P41594 1212 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 U2AF1Q01081 240 aaKnown RBP eCLIP8.16□□□□□ -1.1
SF3B1-209ENST00000479532 NBPF6Q5VWK0 638 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 POTEAQ6S8J7 498 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 IGSF1Q8N6C5 1336 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 PNMA1Q8ND90 353 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 NBPF4Q96M43 638 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 PLEKHG2Q9H7P9 1386 aa8.16□□□□□ -1.1
SF3B1-209ENST00000479532 RGS17Q9UGC6 210 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-209ENST00000479532 THSD7AQ9UPZ6 1657 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 EXOC5O00471 708 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 F12P00748 615 aaPredicted RBP8.15□□□□□ -1.1
SF3B1-209ENST00000479532 PDE3BQ13370 1112 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 DDB1Q16531 1140 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 SULT6B1Q6IMI4 303 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 USHBP1Q8N6Y0 703 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 FOXJ1Q92949 421 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 MRS2Q9HD23 443 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 MAP10Q9P2G4 905 aa8.15□□□□□ -1.1
SF3B1-209ENST00000479532 NCAPD2Q15021 1401 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 SLC35F4A4IF30 521 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 ITGB2P05107 769 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 SRSF11Q05519 484 aaKnown RBP8.14□□□□□ -1.11
SF3B1-209ENST00000479532 AMOTQ4VCS5 1084 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 SEPT12Q8IYM1 358 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 SPG7Q9UQ90 795 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 LRRC37A3O60309 1634 aa8.14□□□□□ -1.11
SF3B1-209ENST00000479532 DISP2A7MBM2 1401 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 RGS12O14924 1447 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 TNS2Q63HR2 1409 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 MAPK8IP3Q9UPT6 1336 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 CCER2I3L3R5 266 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 HMOX1P09601 288 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 PLEKHO1Q53GL0 409 aaPredicted RBP8.13□□□□□ -1.11
SF3B1-209ENST00000479532 NEDD1Q8NHV4 660 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 ZCRB1Q8TBF4 217 aaKnown RBP8.13□□□□□ -1.11
SF3B1-209ENST00000479532 ALG2Q9H553 416 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 BRWD3Q6RI45 1802 aa8.13□□□□□ -1.11
SF3B1-209ENST00000479532 OVOS2A0A0G2JMS6 1433 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 PKD1L3Q7Z443 1732 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 KDRP35968 1356 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 PCDH11XQ9BZA7 1347 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 PCDH11YQ9BZA8 1340 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 PDIA4P13667 645 aaKnown RBP8.12□□□□□ -1.11
SF3B1-209ENST00000479532 SOX11P35716 441 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 KRT27Q7Z3Y8 459 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 SH3RF1Q7Z6J0 888 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 FKBPLQ9UIM3 349 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 MEGF6O75095 1541 aa8.12□□□□□ -1.11
SF3B1-209ENST00000479532 HSP90AB1P08238 724 aaKnown RBP8.11□□□□□ -1.11
SF3B1-209ENST00000479532 PRKAR2BP31323 418 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 BAG6P46379 1132 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 SEMA3FQ13275 785 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 C1orf141Q5JVX7 400 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 AEBP1Q8IUX7 1158 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 GAS2L2Q8NHY3 880 aa8.11□□□□□ -1.11
SF3B1-209ENST00000479532 FURINP09958 794 aa8.1□□□□□ -1.11
SF3B1-209ENST00000479532 FBXO45P0C2W1 286 aa8.1□□□□□ -1.11
SF3B1-209ENST00000479532 NR1H3Q13133 447 aa8.1□□□□□ -1.11
SF3B1-209ENST00000479532 BPHLQ86WA6 291 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-209ENST00000479532 IFNL2Q8IZJ0 200 aa8.1□□□□□ -1.11
SF3B1-209ENST00000479532 DDX54Q8TDD1 881 aaKnown RBP8.1□□□□□ -1.11
SF3B1-209ENST00000479532 SHANK3Q9BYB0 1731 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 ZBBXA8MT70 800 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 RFX1P22670 979 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 FSHRP23945 695 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 ERICH6BQ5W0A0 696 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 ZNF530Q6P9A1 599 aaPredicted RBP8.09□□□□□ -1.11
SF3B1-209ENST00000479532 FAM196AQ6ZSG2 479 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 RETREG2Q8NC44 543 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 RUNDC1Q96C34 613 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 PPP1R12CQ9BZL4 782 aa8.09□□□□□ -1.11
SF3B1-209ENST00000479532 ZC3H4Q9UPT8 1303 aaKnown RBP8.08□□□□□ -1.12
SF3B1-209ENST00000479532 LMOD3Q0VAK6 560 aa8.08□□□□□ -1.12
SF3B1-209ENST00000479532 AKAP4Q5JQC9 854 aa8.08□□□□□ -1.12
SF3B1-209ENST00000479532 FAM9BQ8IZU0 186 aa8.08□□□□□ -1.12
SF3B1-209ENST00000479532 PNISRQ8TF01 805 aaKnown RBP8.08□□□□□ -1.12
SF3B1-209ENST00000479532 RTF1Q92541 710 aaKnown RBP8.08□□□□□ -1.12
SF3B1-209ENST00000479532 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 PALM3A6NDB9 673 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 PHKG2P15735 406 aa8.07□□□□□ -1.12
SF3B1-209ENST00000479532 SF3B2Q13435 895 aaKnown RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 MTHFSDQ2M296 383 aaKnown RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 CCDC184Q52MB2 194 aa8.07□□□□□ -1.12
SF3B1-209ENST00000479532 VASH1Q7L8A9 365 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 MARCH10Q8NA82 808 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-209ENST00000479532 PBXIP1Q96AQ6 731 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms