RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 TRIM33Q9UPN9 1127 aa8.33□□□□□ -1.08
VPS50-214ENST00000477935 KRBA1A5PL33 1030 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 GPR182O15218 404 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 SMNDC1O75940 238 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS50-214ENST00000477935 IGHA2P01877 340 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 PRRT3Q5FWE3 981 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 CEP135Q66GS9 1140 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 ILDR2Q71H61 639 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 RBCK1Q9BYM8 510 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 DCTN4Q9UJW0 460 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 AMOTL2Q9Y2J4 779 aa8.32□□□□□ -1.08
VPS50-214ENST00000477935 A0A0A0MRY4 1105 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 ACPPP15309 386 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 MAPK1P28482 360 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 TRIM28Q13263 835 aaKnown RBP8.31□□□□□ -1.08
VPS50-214ENST00000477935 WFDC8Q8IUA0 241 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 KCTD17Q8N5Z5 321 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 PBX4Q9BYU1 374 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 ZFYVE28Q9HCC9 887 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 ARAP1Q96P48 1450 aa8.31□□□□□ -1.08
VPS50-214ENST00000477935 RSF1Q96T23 1441 aaPredicted RBP8.3□□□□□ -1.08
VPS50-214ENST00000477935 BAG6P46379 1132 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 PLA2G4EQ3MJ16 856 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 IL22RA1Q8N6P7 574 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 DMRTB1Q96MA1 342 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 DZANK1Q9NVP4 752 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 FANCD2Q9BXW9 1451 aa8.3□□□□□ -1.08
VPS50-214ENST00000477935 TRPA1O75762 1119 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 NEFLP07196 543 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 EDN3P14138 238 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 RAC1P63000 192 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 ORC1Q13415 861 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 ADAMTSL4Q6UY14 1074 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 TMC7Q7Z402 723 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 NIF3L1Q9GZT8 377 aa8.29□□□□□ -1.08
VPS50-214ENST00000477935 NFKBIEO00221 500 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 ITGB2P05107 769 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 GRIK4Q16099 956 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 PEAR1Q5VY43 1037 aaPredicted RBP8.28□□□□□ -1.08
VPS50-214ENST00000477935 USPL1Q5W0Q7 1092 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 FMR1NBQ8N0W7 255 aaPredicted RBP8.28□□□□□ -1.08
VPS50-214ENST00000477935 CACTIN-AS1Q8N1I8 211 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 DTWD1Q8N5C7 304 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 ALKBH8Q96BT7 664 aaKnown RBP8.28□□□□□ -1.08
VPS50-214ENST00000477935 POP1Q99575 1024 aaKnown RBP8.28□□□□□ -1.08
VPS50-214ENST00000477935 LACRTQ9GZZ8 138 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 LATS2Q9NRM7 1088 aa8.28□□□□□ -1.08
VPS50-214ENST00000477935 CPNE3O75131 537 aaKnown RBP8.27□□□□□ -1.09
VPS50-214ENST00000477935 POLR3DP05423 398 aaPredicted RBP8.27□□□□□ -1.09
VPS50-214ENST00000477935 OSMRQ99650 979 aa8.27□□□□□ -1.09
VPS50-214ENST00000477935 ZKSCAN3Q9BRR0 538 aa8.27□□□□□ -1.09
VPS50-214ENST00000477935 ELNP15502 786 aa8.26□□□□□ -1.09
VPS50-214ENST00000477935 CHRNA4P43681 627 aa8.26□□□□□ -1.09
VPS50-214ENST00000477935 GALNT12Q8IXK2 581 aa8.26□□□□□ -1.09
VPS50-214ENST00000477935 HHIPQ96QV1 700 aa8.26□□□□□ -1.09
VPS50-214ENST00000477935 C1QTNF9BB2RNN3 333 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 PDE2AO00408 941 aaPredicted RBP8.25□□□□□ -1.09
VPS50-214ENST00000477935 EIF1AYO14602 144 aaKnown RBP8.25□□□□□ -1.09
VPS50-214ENST00000477935 DEAF1O75398 565 aaPredicted RBP8.25□□□□□ -1.09
VPS50-214ENST00000477935 PTPRAP18433 802 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 SND1Q7KZF4 910 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS50-214ENST00000477935 CD163Q86VB7 1156 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 FBXO11Q86XK2 927 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 TMEM102Q8N9M5 508 aaPredicted RBP8.25□□□□□ -1.09
VPS50-214ENST00000477935 ADAM19Q9H013 955 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 MUC3BQ9H195 1237 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 DNAJC25Q9H1X3 360 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 PPME1Q9Y570 386 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 IFT140Q96RY7 1462 aa8.25□□□□□ -1.09
VPS50-214ENST00000477935 TREHO43280 583 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 APBA3O96018 575 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 EPHA1P21709 976 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 CDC27P30260 824 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 SETDB1Q15047 1291 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 GPAT2Q6NUI2 795 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 NXPE3Q969Y0 559 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 NACC1Q96RE7 527 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 CSRNP1Q96S65 589 aa8.24□□□□□ -1.09
VPS50-214ENST00000477935 FAM177BA6PVY3 158 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 LINC01387J3KSC0 135 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 SELPP16109 830 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 TXNDC11Q6PKC3 985 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 SHISA2Q6UWI4 295 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 ZSCAN29Q8IWY8 852 aaPredicted RBP8.23□□□□□ -1.09
VPS50-214ENST00000477935 ASB16Q96NS5 453 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 SRA1Q9HD15 236 aaKnown RBP8.23□□□□□ -1.09
VPS50-214ENST00000477935 NPHS2Q9NP85 383 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 SH2B1Q9NRF2 756 aaPredicted RBP8.23□□□□□ -1.09
VPS50-214ENST00000477935 CFTRP13569 1480 aa8.23□□□□□ -1.09
VPS50-214ENST00000477935 A0A1W2PP55 124 aa8.22□□□□□ -1.09
VPS50-214ENST00000477935 CDC25BP30305 580 aa8.22□□□□□ -1.09
VPS50-214ENST00000477935 DSC3Q14574 896 aa8.22□□□□□ -1.09
VPS50-214ENST00000477935 SPOCK3Q9BQ16 436 aa8.22□□□□□ -1.09
VPS50-214ENST00000477935 BHLHE41Q9C0J9 482 aaPredicted RBP8.22□□□□□ -1.09
VPS50-214ENST00000477935 URB2Q14146 1524 aaKnown RBP8.22□□□□□ -1.09
VPS50-214ENST00000477935 IGHA1P01876 353 aa8.21□□□□□ -1.1
VPS50-214ENST00000477935 PROCP04070 461 aa8.21□□□□□ -1.1
VPS50-214ENST00000477935 MAP4K3Q8IVH8 894 aa8.21□□□□□ -1.1
VPS50-214ENST00000477935 ASAP3Q8TDY4 903 aa8.21□□□□□ -1.1
VPS50-214ENST00000477935 CCDC74AQ96AQ1 378 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms