RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 DDX46Q7L014 1031 aaKnown RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 PCMTD1Q96MG8 357 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 MARF1Q9Y4F3 1742 aaKnown RBP13.93□□□□□ -0.18
SYNE2-207ENST00000458046 AXDND1Q5T1B0 1012 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-207ENST00000458046 KSR2Q6VAB6 950 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 RUFY2Q8WXA3 655 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 CCDC8Q9H0W5 538 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-207ENST00000458046 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 CCDC39Q9UFE4 941 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 CACNA1FO60840 1977 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 KCNH5Q8NCM2 988 aa13.92□□□□□ -0.18
SYNE2-207ENST00000458046 CCDC85AQ96PX6 553 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-207ENST00000458046 GCP02774 474 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 GJB2P29033 226 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 TBX4P57082 545 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 MTX1Q13505 466 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 SMYD5Q6GMV2 418 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 FAM227BQ96M60 508 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 SIL1Q9H173 461 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 VRTNQ9H8Y1 702 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 MAP3K20Q9NYL2 800 aaKnown RBP13.91□□□□□ -0.18
SYNE2-207ENST00000458046 USP42Q9H9J4 1324 aaKnown RBP13.91□□□□□ -0.18
SYNE2-207ENST00000458046 RRP9O43818 475 aaKnown RBP13.91□□□□□ -0.18
SYNE2-207ENST00000458046 F13A1P00488 732 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 KCNJ4P48050 445 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 PDAP1Q13442 181 aaKnown RBP13.91□□□□□ -0.18
SYNE2-207ENST00000458046 NOP9Q86U38 636 aaKnown RBP13.91□□□□□ -0.18
SYNE2-207ENST00000458046 NECAB1Q8N987 351 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 SUCLG2Q96I99 432 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 ORAI2Q96SN7 254 aa13.91□□□□□ -0.18
SYNE2-207ENST00000458046 COL9A3Q14050 684 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-207ENST00000458046 CCDC144BQ3MJ40 725 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 AMOTQ4VCS5 1084 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 CYP46A1Q9Y6A2 500 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 CAMTA1Q9Y6Y1 1673 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 COL22A1Q8NFW1 1626 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-207ENST00000458046 ALDH1L1O75891 902 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 SASH1O94885 1247 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 EGFL6Q8IUX8 553 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 KLHDC4Q8TBB5 520 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 ANKRD24Q8TF21 1146 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 DHX38Q92620 1227 aaKnown RBP13.9□□□□□ -0.18
SYNE2-207ENST00000458046 EAF2Q96CJ1 260 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-207ENST00000458046 KAZALD1Q96I82 304 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 BICC1Q9H694 974 aaKnown RBP13.9□□□□□ -0.18
SYNE2-207ENST00000458046 WWC3Q9ULE0 1092 aa13.9□□□□□ -0.18
SYNE2-207ENST00000458046 DNM1Q05193 864 aaKnown RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 CCDC183Q5T5S1 534 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 STAG1Q8WVM7 1258 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 RPS6KC1Q96S38 1066 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 SNRKQ9NRH2 765 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 TLR7Q9NYK1 1049 aaKnown RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 VPS37CA5D8V6 355 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 GRM8O00222 908 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 HCLS1P14317 486 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 G3BP1Q13283 466 aaKnown RBP eCLIP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 VPS53Q5VIR6 699 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 ERC1Q8IUD2 1116 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 RPUSD2Q8IZ73 545 aaKnown RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 TMEM87AQ8NBN3 555 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 BOLA2Q9H3K6 86 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 ZSWIM6Q9HCJ5 1215 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 USP25Q9UHP3 1055 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 TPX2Q9ULW0 747 aaKnown RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 AXIN2Q9Y2T1 843 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 RBM8AQ9Y5S9 174 aaKnown RBP13.89□□□□□ -0.19
SYNE2-207ENST00000458046 BRWD3Q6RI45 1802 aa13.89□□□□□ -0.19
SYNE2-207ENST00000458046 CALRP27797 417 aaKnown RBP13.88□□□□□ -0.19
SYNE2-207ENST00000458046 PSEN1P49768 467 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 UBE2HP62256 183 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 NMIQ13287 307 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-207ENST00000458046 SLC39A6Q13433 755 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 NECTIN1Q15223 517 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 ME3Q16798 604 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 C9orf131Q5VYM1 1079 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 TCEANC2Q96MN5 208 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 FRMD4BQ9Y2L6 1034 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 PSDA5PKW4 1024 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-207ENST00000458046 HOXA2O43364 376 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 MYL6BP14649 208 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 ZKSCAN1P17029 563 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-207ENST00000458046 ARHGEF25Q86VW2 580 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 MTMR6Q9Y217 621 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 CTDP1Q9Y5B0 961 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-207ENST00000458046 PXDNQ92626 1479 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 LTN1O94822 1766 aa13.88□□□□□ -0.19
SYNE2-207ENST00000458046 CREB3L3Q68CJ9 461 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 LINS1Q8NG48 757 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 GNEQ9Y223 722 aaKnown RBP13.87□□□□□ -0.19
SYNE2-207ENST00000458046 CCDC171Q6TFL3 1326 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 DCCP43146 1447 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 ST3GAL1Q11201 340 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 PLEKHG6Q3KR16 790 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 RIC3Q7Z5B4 369 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 JARID2Q92833 1246 aaPredicted RBP13.87□□□□□ -0.19
SYNE2-207ENST00000458046 ATP6V1DQ9Y5K8 247 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.87□□□□□ -0.19
SYNE2-207ENST00000458046 TCHHQ07283 1943 aa13.87□□□□□ -0.19
SYNE2-207ENST00000458046 NFAT5O94916 1531 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms