RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 TRIM17Q9Y577 477 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 RIC1Q4ADV7 1423 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 TRIOBPQ9H2D6 2365 aa11.14□□□□□ -0.63
HDAC1-202ENST00000428704 H0YGN5 161 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 EGFRP00533 1210 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 FKBP1BP68106 108 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 LMOD3Q0VAK6 560 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 NEUROD2Q15784 382 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 OTUD5Q96G74 571 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 RTFDC1Q9BY42 306 aaPredicted RBP11.13□□□□□ -0.63
HDAC1-202ENST00000428704 GGA3Q9NZ52 723 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 TSPYL4Q9UJ04 414 aa11.13□□□□□ -0.63
HDAC1-202ENST00000428704 HTTP42858 3142 aa11.12□□□□□ -0.63
HDAC1-202ENST00000428704 LHX8Q68G74 356 aa11.12□□□□□ -0.63
HDAC1-202ENST00000428704 TRMT2AQ8IZ69 625 aaKnown RBP11.12□□□□□ -0.63
HDAC1-202ENST00000428704 MPNDQ8N594 471 aa11.12□□□□□ -0.63
HDAC1-202ENST00000428704 BABAM1Q9NWV8 329 aa11.12□□□□□ -0.63
HDAC1-202ENST00000428704 RCAN3Q9UKA8 241 aa11.12□□□□□ -0.63
HDAC1-202ENST00000428704 YDJCA8MPS7 323 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 CHL1O00533 1208 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 TM4SF4P48230 202 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 SREBF2Q12772 1141 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 KRT24Q2M2I5 525 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 KIF4BQ2VIQ3 1234 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 OTOP1Q7RTM1 612 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 LRP10Q7Z4F1 713 aa11.11□□□□□ -0.63
HDAC1-202ENST00000428704 PITPNM2Q9BZ72 1349 aa11.1□□□□□ -0.63
HDAC1-202ENST00000428704 PSMD14O00487 310 aa11.1□□□□□ -0.63
HDAC1-202ENST00000428704 APAF1O14727 1248 aa11.1□□□□□ -0.63
HDAC1-202ENST00000428704 R3HDMLQ9H3Y0 253 aa11.1□□□□□ -0.63
HDAC1-202ENST00000428704 RBM27Q9P2N5 1060 aaKnown RBP11.1□□□□□ -0.63
HDAC1-202ENST00000428704 COL6A3P12111 3177 aa11.1□□□□□ -0.63
HDAC1-202ENST00000428704 ERBB4Q15303 1308 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 BRCA2P51587 3418 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 UBE2Q2LH0YL09 131 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 GPTP24298 496 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 RPS12P25398 132 aaKnown RBP11.09□□□□□ -0.63
HDAC1-202ENST00000428704 RRP1P56182 461 aaKnown RBP11.09□□□□□ -0.63
HDAC1-202ENST00000428704 PDIA6Q15084 440 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 MAMSTRQ6ZN01 415 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 TTLL7Q6ZT98 887 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 C3orf67Q6ZVT6 689 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 MOB2Q70IA6 237 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 CDCA7LQ96GN5 454 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 NLRP3Q96P20 1036 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 CFHR5Q9BXR6 569 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 TSHZ2Q9NRE2 1034 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 ABCC4O15439 1325 aa11.09□□□□□ -0.63
HDAC1-202ENST00000428704 ASTN2O75129 1339 aaPredicted RBP11.09□□□□□ -0.63
HDAC1-202ENST00000428704 IBTKQ9P2D0 1353 aaPredicted RBP11.08□□□□□ -0.64
HDAC1-202ENST00000428704 ZNF853P0CG23 659 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 MYL6BP14649 208 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 IRX6P78412 446 aaPredicted RBP11.08□□□□□ -0.64
HDAC1-202ENST00000428704 SLFN5Q08AF3 891 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 TTLL12Q14166 644 aaPredicted RBP11.08□□□□□ -0.64
HDAC1-202ENST00000428704 PROSER3Q2NL68 480 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 DUSP27Q5VZP5 1158 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 SP8Q8IXZ3 490 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 ARMC5Q96C12 935 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 PTPN22Q9Y2R2 807 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 CENPFP49454 3210 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 LAMB2P55268 1798 aa11.08□□□□□ -0.64
HDAC1-202ENST00000428704 RANBP2P49792 3224 aaKnown RBP11.07□□□□□ -0.64
HDAC1-202ENST00000428704 BBOX1O75936 387 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 CCDC27Q2M243 656 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 ANGEL2Q5VTE6 544 aaKnown RBP11.07□□□□□ -0.64
HDAC1-202ENST00000428704 SUSD4Q5VX71 490 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 DBNDD1Q9H9R9 158 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 MBIPQ9NS73 344 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 MAP3K15Q6ZN16 1313 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 UBN2Q6ZU65 1347 aa11.07□□□□□ -0.64
HDAC1-202ENST00000428704 ERVV-1B6SEH8 477 aa11.06□□□□□ -0.64
HDAC1-202ENST00000428704 ANXA1P04083 346 aa11.06□□□□□ -0.64
HDAC1-202ENST00000428704 ERO1AQ96HE7 468 aa11.06□□□□□ -0.64
HDAC1-202ENST00000428704 LAS1LQ9Y4W2 734 aaKnown RBP11.06□□□□□ -0.64
HDAC1-202ENST00000428704 CEP290O15078 2479 aa11.06□□□□□ -0.64
HDAC1-202ENST00000428704 PAPPA2Q9BXP8 1791 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 E9PSI1 815 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 NTSR2O95665 410 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 EIF2S2P20042 333 aaKnown RBP11.05□□□□□ -0.64
HDAC1-202ENST00000428704 TCIRG1Q13488 830 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 SCARF1Q14162 830 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 WASHC4Q2M389 1173 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 SLC4A8Q2Y0W8 1093 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 KIF6Q6ZMV9 814 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 NECTIN2Q92692 538 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 ZBTB3Q9H5J0 574 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 SCUBE2Q9NQ36 999 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 IFT57Q9NWB7 429 aa11.05□□□□□ -0.64
HDAC1-202ENST00000428704 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.05□□□□□ -0.64
HDAC1-202ENST00000428704 SALL2Q9Y467 1007 aaPredicted RBP11.05□□□□□ -0.64
HDAC1-202ENST00000428704 DDX60Q8IY21 1712 aaKnown RBP11.04□□□□□ -0.64
HDAC1-202ENST00000428704 KIAA0100Q14667 2235 aaKnown RBP11.04□□□□□ -0.64
HDAC1-202ENST00000428704 RIMBP2O15034 1052 aa11.04□□□□□ -0.64
HDAC1-202ENST00000428704 HOXB7P09629 217 aa11.04□□□□□ -0.64
HDAC1-202ENST00000428704 PPP1R42Q7Z4L9 355 aa11.04□□□□□ -0.64
HDAC1-202ENST00000428704 CD99L2Q8TCZ2 262 aa11.04□□□□□ -0.64
HDAC1-202ENST00000428704 DPF3Q92784 378 aa11.04□□□□□ -0.64
HDAC1-202ENST00000428704 ZNF333Q96JL9 665 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms