RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NCAPG2Q86XI2 1143 aa4.04□□□□□ -1.76
VPS13A-208ENST00000423463 KIAA0586Q9BVV6 1533 aa4.04□□□□□ -1.76
VPS13A-208ENST00000423463 LOC102724428A0A0B4J2F2 783 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 RGS9O75916 674 aaPredicted RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 CES1P23141 567 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 USP5P45974 858 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 GSK3AP49840 483 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 AFF1P51825 1210 aaKnown RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 SIK1P57059 783 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 COL9A3Q14050 684 aaPredicted RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 BEND7Q8N7W2 519 aaPredicted RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 PLD4Q96BZ4 506 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 SCARF2Q96GP6 870 aaPredicted RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 HHIPQ96QV1 700 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 CEP170Q5SW79 1584 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 GHRHP01286 108 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 POLR3DP05423 398 aaPredicted RBP4.03□□□□□ -1.76
VPS13A-208ENST00000423463 MAPK1P28482 360 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 PLVAPQ9BX97 442 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 LATS2Q9NRM7 1088 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 TRIM33Q9UPN9 1127 aa4.03□□□□□ -1.76
VPS13A-208ENST00000423463 PRXQ9BXM0 1461 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 GNB5O14775 395 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 PHACTR2O75167 634 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 IGHA2P01877 340 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 NID1P14543 1247 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 USPL1Q5W0Q7 1092 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 KANK3Q6NY19 840 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 TMC7Q7Z402 723 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 LACRTQ9GZZ8 138 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 RASSF4Q9H2L5 321 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 RIMBP3CA6NJZ7 1639 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 RIMBP3BA6NNM3 1639 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 RIMBP3Q9UFD9 1639 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 CDC25BP30305 580 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 TXNDC11Q6PKC3 985 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 FAM9AQ8IZU1 332 aaPredicted RBP4.02□□□□□ -1.77
VPS13A-208ENST00000423463 SNX29Q8TEQ0 813 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 SPACA7Q96KW9 195 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 NIF3L1Q9GZT8 377 aa4.02□□□□□ -1.77
VPS13A-208ENST00000423463 PRG4Q92954 1404 aaPredicted RBP4.02□□□□□ -1.77
VPS13A-208ENST00000423463 RPLP1P05386 114 aaKnown RBP4.01□□□□□ -1.77
VPS13A-208ENST00000423463 EHHADHQ08426 723 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 HYAL2Q12891 473 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 GRIK5Q16478 980 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 PCSK7Q16549 785 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 CEP135Q66GS9 1140 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 XKR5Q6UX68 686 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 FAM129BQ96TA1 746 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 ARAP1Q96P48 1450 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 RNF225M0QZC1 329 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-208ENST00000423463 RASSF7Q02833 373 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 DMRTC2Q8IXT2 367 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-208ENST00000423463 DCTN4Q9UJW0 460 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 SHROOM2Q13796 1616 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 HOXD8P13378 290 aaPredicted RBP4.01□□□□□ -1.77
VPS13A-208ENST00000423463 CEP120Q8N960 986 aa4.01□□□□□ -1.77
VPS13A-208ENST00000423463 CARMIL2Q6F5E8 1435 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 METTL12A8MUP2 240 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 KIF4AO95239 1232 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 GRIK4Q16099 956 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 TRAPPC3LQ5T215 181 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 PEAR1Q5VY43 1037 aaPredicted RBP4□□□□□ -1.77
VPS13A-208ENST00000423463 KCTD17Q8N5Z5 321 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 ZKSCAN3Q9BRR0 538 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 RBSNQ9H1K0 784 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 NPHS2Q9NP85 383 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 SALL4Q9UJQ4 1053 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 PDE3BQ13370 1112 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 DCAF5Q96JK2 942 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 RBCK1Q9BYM8 510 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 DZANK1Q9NVP4 752 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 FRRS1LQ9P0K9 344 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 AMOTL2Q9Y2J4 779 aa4□□□□□ -1.77
VPS13A-208ENST00000423463 GDF11O95390 407 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 KCNMA1Q12791 1236 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 MSL1Q68DK7 614 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 SHISA2Q6UWI4 295 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 PI16Q6UXB8 463 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 SND1Q7KZF4 910 aaKnown RBP eCLIP3.99□□□□□ -1.77
VPS13A-208ENST00000423463 SETDB2Q96T68 719 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 POP1Q99575 1024 aaKnown RBP3.99□□□□□ -1.77
VPS13A-208ENST00000423463 OSMRQ99650 979 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 GZF1Q9H116 711 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-208ENST00000423463 PRDM6Q9NQX0 595 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 SH2B1Q9NRF2 756 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-208ENST00000423463 TNIKQ9UKE5 1360 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 KRBA1A5PL33 1030 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 NFKBIEO00221 500 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 EIF1AYO14602 144 aaKnown RBP3.99□□□□□ -1.77
VPS13A-208ENST00000423463 BAG6P46379 1132 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 WFDC8Q8IUA0 241 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 IL22RA1Q8N6P7 574 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 PBX4Q9BYU1 374 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 ZFYVE28Q9HCC9 887 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 PTPRGP23470 1445 aa3.99□□□□□ -1.77
VPS13A-208ENST00000423463 ERCC6L2Q5T890 1561 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 A0A0A0MRY4 1105 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 SMNDC1O75940 238 aaKnown RBP eCLIP3.98□□□□□ -1.77
VPS13A-208ENST00000423463 EPHA1P21709 976 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms