RNA–Protein interactions for RNA: ENST00000417496.6

HDAC9-208, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-208ENST00000417496 CCDC144BQ3MJ40 725 aa17.02■□□□□ 0.31
HDAC9-208ENST00000417496 ILDR1Q86SU0 546 aaPredicted RBP17.02■□□□□ 0.31
HDAC9-208ENST00000417496 PLA2G4DQ86XP0 818 aa17.02■□□□□ 0.31
HDAC9-208ENST00000417496 CCDC144CPQ8IYA2 1237 aa17.02■□□□□ 0.31
HDAC9-208ENST00000417496 KLHL34Q8N239 644 aa17.02■□□□□ 0.31
HDAC9-208ENST00000417496 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.31
HDAC9-208ENST00000417496 RIOK3O14730 519 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 RNF113AO15541 343 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 PI16Q6UXB8 463 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 TDRD7Q8NHU6 1098 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 GJB4Q9NTQ9 266 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 KIF3AQ9Y496 699 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 AFDNP55196 1824 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 LMTK3Q96Q04 1460 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 SNW1Q13573 536 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 ARID5BQ14865 1188 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 LLPHQ9BRT6 129 aaKnown RBP17.01■□□□□ 0.31
HDAC9-208ENST00000417496 RCOR1Q9UKL0 485 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 RFX7Q2KHR2 1363 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 PALLDQ8WX93 1383 aa17.01■□□□□ 0.31
HDAC9-208ENST00000417496 TPM3P06753 285 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 ME1P48163 572 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 SCARF1Q14162 830 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 WASHC4Q2M389 1173 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 ZSCAN25Q6NSZ9 544 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 C16orf45Q96MC5 204 aaPredicted RBP17■□□□□ 0.31
HDAC9-208ENST00000417496 CLIP2Q9UDT6 1046 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 FDPSP14324 419 aaKnown RBP17■□□□□ 0.31
HDAC9-208ENST00000417496 NAA16Q6N069 864 aaPredicted RBP17■□□□□ 0.31
HDAC9-208ENST00000417496 TOM1L2Q6ZVM7 507 aa17■□□□□ 0.31
HDAC9-208ENST00000417496 BCL11BQ9C0K0 894 aaPredicted RBP17■□□□□ 0.31
HDAC9-208ENST00000417496 MST1RQ04912 1400 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 FOXP2O15409 715 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 GTF2F1P35269 517 aaKnown RBP eCLIP16.99■□□□□ 0.31
HDAC9-208ENST00000417496 SYNE4Q8N205 404 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 ZCRB1Q8TBF4 217 aaKnown RBP16.99■□□□□ 0.31
HDAC9-208ENST00000417496 CACTINQ8WUQ7 758 aaKnown RBP16.99■□□□□ 0.31
HDAC9-208ENST00000417496 AGXT2Q9BYV1 514 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 BCL2L12Q9HB09 334 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 ARFGEF2Q9Y6D5 1785 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 POLR3DP05423 398 aaPredicted RBP16.99■□□□□ 0.31
HDAC9-208ENST00000417496 IQCB1Q15051 598 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 GORABQ5T7V8 394 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 FAM89AQ96GI7 184 aa16.99■□□□□ 0.31
HDAC9-208ENST00000417496 ZNF142P52746 1687 aaPredicted RBP16.99■□□□□ 0.31
HDAC9-208ENST00000417496 CEP126Q9P2H0 1117 aa16.98■□□□□ 0.31
HDAC9-208ENST00000417496 ALS2Q96Q42 1657 aa16.98■□□□□ 0.31
HDAC9-208ENST00000417496 SALL1Q9NSC2 1324 aa16.98■□□□□ 0.31
HDAC9-208ENST00000417496 CCDC191Q8NCU4 936 aa16.98■□□□□ 0.31
HDAC9-208ENST00000417496 GOLGA6L19H0YKK7 550 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 CCDC57Q2TAC2 916 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 FSIP1Q8NA03 581 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 XAGE2Q96GT9 111 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 GPR108Q9NPR9 543 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 A0A1B0GVL5 298 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 FGAP02671 866 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 CCDC73Q6ZRK6 1079 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 PUS7LQ9H0K6 701 aaKnown RBP16.97■□□□□ 0.31
HDAC9-208ENST00000417496 DENND2AQ9ULE3 1009 aa16.97■□□□□ 0.31
HDAC9-208ENST00000417496 CARMIL3Q8ND23 1372 aa16.96■□□□□ 0.31
HDAC9-208ENST00000417496 CHAF1AQ13111 956 aaPredicted RBP16.96■□□□□ 0.31
HDAC9-208ENST00000417496 ENGASEQ8NFI3 743 aa16.96■□□□□ 0.31
HDAC9-208ENST00000417496 PRDM11Q9NQV5 511 aa16.96■□□□□ 0.31
HDAC9-208ENST00000417496 PCDHA7Q9UN72 937 aa16.96■□□□□ 0.31
HDAC9-208ENST00000417496 KINO60870 393 aaKnown RBP16.96■□□□□ 0.3
HDAC9-208ENST00000417496 ZAP70P43403 619 aa16.96■□□□□ 0.3
HDAC9-208ENST00000417496 TTC39AQ5SRH9 613 aa16.96■□□□□ 0.3
HDAC9-208ENST00000417496 ZNF274Q96GC6 653 aaPredicted RBP16.96■□□□□ 0.3
HDAC9-208ENST00000417496 COL18A1P39060 1754 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 SPATA31A3Q5VYP0 1347 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 MTERF4Q7Z6M4 381 aaKnown RBP16.95■□□□□ 0.3
HDAC9-208ENST00000417496 CLIC4Q9Y696 253 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 CCDC158Q5M9N0 1113 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 NKX2-3Q8TAU0 364 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 PRDM10Q9NQV6 1147 aa16.95■□□□□ 0.3
HDAC9-208ENST00000417496 BECN2A8MW95 431 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 FAM160A1Q05DH4 1040 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 FILIP1Q7Z7B0 1213 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 DHX40Q8IX18 779 aaKnown RBP16.94■□□□□ 0.3
HDAC9-208ENST00000417496 ZNF396Q96N95 335 aaPredicted RBP16.94■□□□□ 0.3
HDAC9-208ENST00000417496 GLI3P10071 1580 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 PRC1O43663 620 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 NDUFA8P51970 172 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 STX1AQ16623 288 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 STRN4Q9NRL3 753 aa16.94■□□□□ 0.3
HDAC9-208ENST00000417496 PCDH11XQ9BZA7 1347 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 PCDH11YQ9BZA8 1340 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 KLF18A0A0U1RQI7 1052 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 CIAO1O76071 339 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 SDF4Q9BRK5 362 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 LAMA4Q16363 1823 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 TNS3Q68CZ2 1445 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 KIF1AQ12756 1690 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 USP27XA6NNY8 438 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 TAF7LQ5H9L4 462 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.93■□□□□ 0.3
HDAC9-208ENST00000417496 CCDC94Q9BW85 323 aaPredicted RBP16.93■□□□□ 0.3
HDAC9-208ENST00000417496 HPS5Q9UPZ3 1129 aa16.93■□□□□ 0.3
HDAC9-208ENST00000417496 GOLGA8BA8MQT2 603 aa16.92■□□□□ 0.3
HDAC9-208ENST00000417496 TNNT1P13805 278 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms