RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 KIAA1211Q6ZU35 1233 aa20.98■□□□□ 0.95
CLDN4-201ENST00000340958 TNRC6CQ9HCJ0 1690 aaKnown RBP20.98■□□□□ 0.95
CLDN4-201ENST00000340958 A0A0G2JLW4 131 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 SNAP23O00161 211 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 UQCRFS1P1P0C7P4 283 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 TGFB2P61812 414 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 CCDC102BQ68D86 513 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 BRIP1Q9BX63 1249 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 SNRKQ9NRH2 765 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 CRY2Q49AN0 593 aa20.97■□□□□ 0.95
CLDN4-201ENST00000340958 DPEP1P16444 411 aa20.96■□□□□ 0.95
CLDN4-201ENST00000340958 PDE6BP35913 854 aa20.96■□□□□ 0.95
CLDN4-201ENST00000340958 IPO9Q96P70 1041 aaKnown RBP20.96■□□□□ 0.95
CLDN4-201ENST00000340958 ANKIB1Q9P2G1 1089 aa20.96■□□□□ 0.95
CLDN4-201ENST00000340958 DAXXQ9UER7 740 aaPredicted RBP20.96■□□□□ 0.95
CLDN4-201ENST00000340958 DLEC1Q9Y238 1755 aa20.96■□□□□ 0.95
CLDN4-201ENST00000340958 DCAF8L1A6NGE4 600 aa20.95■□□□□ 0.94
CLDN4-201ENST00000340958 YBX3P16989 372 aaKnown RBP eCLIP20.95■□□□□ 0.94
CLDN4-201ENST00000340958 GPR162Q16538 588 aa20.95■□□□□ 0.94
CLDN4-201ENST00000340958 VPS37DQ86XT2 251 aa20.95■□□□□ 0.94
CLDN4-201ENST00000340958 USP26Q9BXU7 913 aa20.95■□□□□ 0.94
CLDN4-201ENST00000340958 COL11A2P13942 1736 aaPredicted RBP20.95■□□□□ 0.94
CLDN4-201ENST00000340958 TAF1P21675 1872 aa20.95■□□□□ 0.94
CLDN4-201ENST00000340958 MCCP23508 829 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 CHRNA5P30532 468 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 PHKA1P46020 1223 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 RBM25P49756 843 aaKnown RBP20.94■□□□□ 0.94
CLDN4-201ENST00000340958 UBE4AQ14139 1066 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 LRRFIP1Q32MZ4 808 aaKnown RBP20.94■□□□□ 0.94
CLDN4-201ENST00000340958 CAVIN4Q5BKX8 364 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 KBTBD3Q8NAB2 608 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 COL4A1P02462 1669 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 SGSM2O43147 1006 aa20.94■□□□□ 0.94
CLDN4-201ENST00000340958 GNL3LQ9NVN8 582 aaKnown RBP20.94■□□□□ 0.94
CLDN4-201ENST00000340958 KCNA3P22001 575 aa20.93■□□□□ 0.94
CLDN4-201ENST00000340958 ZAP70P43403 619 aa20.93■□□□□ 0.94
CLDN4-201ENST00000340958 NMIQ13287 307 aaPredicted RBP20.93■□□□□ 0.94
CLDN4-201ENST00000340958 ZNF512BQ96KM6 892 aaPredicted RBP20.93■□□□□ 0.94
CLDN4-201ENST00000340958 BBOX1O75936 387 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 BCAMP50895 628 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 SCARF1Q14162 830 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 FAM227BQ96M60 508 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 MCAMP43121 646 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 TTF1Q15361 905 aaPredicted RBP20.92■□□□□ 0.94
CLDN4-201ENST00000340958 CRAMP1Q96RY5 1269 aa20.92■□□□□ 0.94
CLDN4-201ENST00000340958 ARID4AP29374 1257 aaPredicted RBP20.91■□□□□ 0.94
CLDN4-201ENST00000340958 HOXA10P31260 410 aaPredicted RBP20.91■□□□□ 0.94
CLDN4-201ENST00000340958 ANTXR1Q9H6X2 564 aa20.91■□□□□ 0.94
CLDN4-201ENST00000340958 RFX7Q2KHR2 1363 aa20.91■□□□□ 0.94
CLDN4-201ENST00000340958 KLRG2A4D1S0 409 aaPredicted RBP20.9■□□□□ 0.94
CLDN4-201ENST00000340958 NPR1P16066 1061 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 PI16Q6UXB8 463 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 SPATA5Q8NB90 893 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 TMX4Q9H1E5 349 aaPredicted RBP20.9■□□□□ 0.94
CLDN4-201ENST00000340958 ZNF804BA4D1E1 1349 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 FRAT2O75474 233 aaPredicted RBP20.9■□□□□ 0.94
CLDN4-201ENST00000340958 GYG1P46976 350 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLDN4-201ENST00000340958 IL25Q9H293 177 aa20.9■□□□□ 0.94
CLDN4-201ENST00000340958 ARFGEF1Q9Y6D6 1849 aa20.89■□□□□ 0.94
CLDN4-201ENST00000340958 RAD50Q92878 1312 aa20.89■□□□□ 0.94
CLDN4-201ENST00000340958 ALDH1B1P30837 517 aa20.89■□□□□ 0.93
CLDN4-201ENST00000340958 C2CD5Q86YS7 1000 aa20.89■□□□□ 0.93
CLDN4-201ENST00000340958 ZNF622Q969S3 477 aaKnown RBP eCLIP20.89■□□□□ 0.93
CLDN4-201ENST00000340958 NSFL1CQ9UNZ2 370 aaKnown RBP20.89■□□□□ 0.93
CLDN4-201ENST00000340958 CACNA1SQ13698 1873 aa20.89■□□□□ 0.93
CLDN4-201ENST00000340958 CHD4Q14839 1912 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 A0A0D9SFI3 127 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 PPEF1O14829 653 aaPredicted RBP20.88■□□□□ 0.93
CLDN4-201ENST00000340958 SRGNP10124 158 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 BECN1Q14457 450 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 XDHP47989 1333 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 RNF113AO15541 343 aaKnown RBP20.88■□□□□ 0.93
CLDN4-201ENST00000340958 RASGRF1Q13972 1273 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 TMC4Q7Z404 712 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 TICAM2Q86XR7 235 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 MASTLQ96GX5 879 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 HMG20BQ9P0W2 317 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 PIM2Q9P1W9 311 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 BCS1LQ9Y276 419 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 LEMD3Q9Y2U8 911 aa20.88■□□□□ 0.93
CLDN4-201ENST00000340958 WTIPA6NIX2 430 aaPredicted RBP20.87■□□□□ 0.93
CLDN4-201ENST00000340958 H0YIN7 160 aa20.87■□□□□ 0.93
CLDN4-201ENST00000340958 MCMDC2Q4G0Z9 681 aa20.87■□□□□ 0.93
CLDN4-201ENST00000340958 ZSCAN25Q6NSZ9 544 aa20.87■□□□□ 0.93
CLDN4-201ENST00000340958 IQSEC3Q9UPP2 1182 aaPredicted RBP20.87■□□□□ 0.93
CLDN4-201ENST00000340958 ARAP2Q8WZ64 1704 aa20.86■□□□□ 0.93
CLDN4-201ENST00000340958 IDH1O75874 414 aaKnown RBP20.86■□□□□ 0.93
CLDN4-201ENST00000340958 ZFYP08048 801 aaPredicted RBP20.86■□□□□ 0.93
CLDN4-201ENST00000340958 WASHC4Q2M389 1173 aa20.86■□□□□ 0.93
CLDN4-201ENST00000340958 EPB41L2O43491 1005 aaKnown RBP20.85■□□□□ 0.93
CLDN4-201ENST00000340958 CYP2E1P05181 493 aaPredicted RBP20.85■□□□□ 0.93
CLDN4-201ENST00000340958 GPSM2P81274 684 aa20.85■□□□□ 0.93
CLDN4-201ENST00000340958 HIBADHP31937 336 aaKnown RBP20.85■□□□□ 0.93
CLDN4-201ENST00000340958 FAM84BQ96KN1 310 aaPredicted RBP20.85■□□□□ 0.93
CLDN4-201ENST00000340958 LSG1Q9H089 658 aaKnown RBP20.85■□□□□ 0.93
CLDN4-201ENST00000340958 HELLSQ9NRZ9 838 aa20.85■□□□□ 0.93
CLDN4-201ENST00000340958 GGA1Q9UJY5 639 aa20.85■□□□□ 0.93
CLDN4-201ENST00000340958 GRIN3BO60391 1043 aa20.84■□□□□ 0.93
CLDN4-201ENST00000340958 UFL1O94874 794 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms