RNA–Protein interactions for RNA: ENST00000335793.3

CDC42EP4-201, Transcript of CDC42 effector protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP4, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-201ENST00000335793 HMGB1P09429 215 aaKnown RBP19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 TTLL5Q6EMB2 1281 aa19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 USP28Q96RU2 1077 aa19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 NPHP4O75161 1426 aaPredicted RBP19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 ATF3P18847 181 aa19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 STOX1Q6ZVD7 989 aa19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 TRMT1Q9NXH9 659 aaKnown RBP19.29■□□□□ 0.68
CDC42EP4-201ENST00000335793 A0A0G2JLW4 131 aa19.28■□□□□ 0.68
CDC42EP4-201ENST00000335793 STK38Q15208 465 aa19.28■□□□□ 0.68
CDC42EP4-201ENST00000335793 ZSCAN25Q6NSZ9 544 aa19.28■□□□□ 0.68
CDC42EP4-201ENST00000335793 TTLL7Q6ZT98 887 aa19.27■□□□□ 0.68
CDC42EP4-201ENST00000335793 CEP126Q9P2H0 1117 aa19.27■□□□□ 0.68
CDC42EP4-201ENST00000335793 A1BGP04217 495 aa19.27■□□□□ 0.68
CDC42EP4-201ENST00000335793 LRRC24Q50LG9 513 aa19.27■□□□□ 0.68
CDC42EP4-201ENST00000335793 NPHP1O15259 732 aa19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 SLFN14P0C7P3 912 aa19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 NSUN7Q8NE18 718 aaKnown RBP19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 DCAF5Q96JK2 942 aa19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 ST7Q9NRC1 585 aa19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 CWC25Q9NXE8 425 aaPredicted RBP19.27■□□□□ 0.67
CDC42EP4-201ENST00000335793 RFX5P48382 616 aaPredicted RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 TSGA10IPQ3SY00 556 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 CCDC112Q8NEF3 446 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 CACTINQ8WUQ7 758 aaKnown RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 ZNF609O15014 1411 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 NCAPD2Q15021 1401 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 E7EWF7 191 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 BIN1O00499 593 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 GNL2Q13823 731 aaKnown RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 STX1AQ16623 288 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 USPL1Q5W0Q7 1092 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 C11orf57Q6ZUT1 292 aaPredicted RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 COL15A1P39059 1388 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 A0A1B0GVL5 298 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 TTC39AQ5SRH9 613 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 PLBD2Q8NHP8 589 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 GPHNQ9NQX3 736 aaPredicted RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 OGFRQ9NZT2 677 aa19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 V9GYY5 206 aaPredicted RBP19.26■□□□□ 0.67
CDC42EP4-201ENST00000335793 HSPD1P10809 573 aaKnown RBP19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 ARID5BQ14865 1188 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 ISM2Q6H9L7 571 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 ADGRL3Q9HAR2 1447 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 A0A1B0GUL7 405 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 CYP27B1O15528 508 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 PFKFB2O60825 505 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 MYCNP04198 464 aaPredicted RBP19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 CCDC57Q2TAC2 916 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 SYNE3Q6ZMZ3 975 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 RALYLQ86SE5 291 aaKnown RBP19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 LTN1O94822 1766 aa19.25■□□□□ 0.67
CDC42EP4-201ENST00000335793 CCDC158Q5M9N0 1113 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 CEP57L1Q8IYX8 460 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 TDRD7Q8NHU6 1098 aaKnown RBP19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 TUBGCP6Q96RT7 1819 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 SMC2O95347 1197 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 AOPEPQ8N6M6 819 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 ALDH8A1Q9H2A2 487 aaPredicted RBP19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 ANO10Q9NW15 660 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 HEG1Q9ULI3 1381 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 CCDC144BQ3MJ40 725 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 CCDC144CPQ8IYA2 1237 aa19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 PUS3Q9BZE2 481 aaKnown RBP19.24■□□□□ 0.67
CDC42EP4-201ENST00000335793 IL15P40933 162 aaPredicted RBP19.23■□□□□ 0.67
CDC42EP4-201ENST00000335793 C8orf76Q96K31 380 aa19.23■□□□□ 0.67
CDC42EP4-201ENST00000335793 CTAGE5O15320 804 aa19.23■□□□□ 0.67
CDC42EP4-201ENST00000335793 SKILP12757 684 aa19.23■□□□□ 0.67
CDC42EP4-201ENST00000335793 RNF113AO15541 343 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 TOM1L2Q6ZVM7 507 aa19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 LLPHQ9BRT6 129 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 NAT10Q9H0A0 1025 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 LOC102724159A0A0B4J2E5 919 aa19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 PWP2Q15269 919 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 EP400NLQ6ZTU2 488 aa19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 GOLPH3LQ9H4A5 285 aa19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 HELLSQ9NRZ9 838 aa19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 PDIA3P30101 505 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 IMMTQ16891 758 aaKnown RBP19.22■□□□□ 0.67
CDC42EP4-201ENST00000335793 KLF18A0A0U1RQI7 1052 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 GOLGA8BA8MQT2 603 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 BRD2P25440 801 aaKnown RBP19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 ORC3Q9UBD5 711 aaPredicted RBP19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 ADAMTSL3P82987 1691 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 A0A0G2JS52 829 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 EYA2O00167 538 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 NAA16Q6N069 864 aaPredicted RBP19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 PLA2G4DQ86XP0 818 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 GJB4Q9NTQ9 266 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 RCOR1Q9UKL0 485 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 NFAT5O94916 1531 aa19.21■□□□□ 0.67
CDC42EP4-201ENST00000335793 CTDNEP1O95476 244 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 PRR29P0C7W0 189 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 FAM160A1Q05DH4 1040 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 PTPN14Q15678 1187 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 RABL6Q3YEC7 729 aaPredicted RBP19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 RGPD2P0DJD1 1756 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 CAVIN2O95810 425 aa19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 GTF2F1P35269 517 aaKnown RBP eCLIP19.2■□□□□ 0.66
CDC42EP4-201ENST00000335793 CEP135Q66GS9 1140 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms