RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CACNA1AO00555 2505 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 OR7C1O76099 320 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-213ENST00000620219 TGM6O95932 706 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 GFRALQ6UXV0 394 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 CASTOR1Q8WTX7 329 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 PROCRQ9UNN8 238 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 FLVCR2Q9UPI3 526 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 OR6C6A6NF89 314 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 EFSO43281 561 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 H2AFB2P0C5Z0 115 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 BLVRBP30043 206 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-213ENST00000620219 DCTDP32321 178 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 ROM1Q03395 351 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 PDCD1Q15116 288 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 CNN3Q15417 329 aaKnown RBP13.81□□□□□ -0.2
CPSF1-213ENST00000620219 RNASE10Q5GAN6 216 aaKnown RBP13.81□□□□□ -0.2
CPSF1-213ENST00000620219 ZNF684Q5T5D7 378 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 NKAIN3Q8N8D7 197 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 OBP2BQ9NPH6 170 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 SLC17A2O00624 439 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 SPRY1O43609 319 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-213ENST00000620219 NBL1P41271 181 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 ARPC4P59998 168 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 GSG1Q2KHT4 349 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 FBXO17Q96EF6 278 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 CACNA1DQ01668 2161 aa13.81□□□□□ -0.2
CPSF1-213ENST00000620219 OR6C65A6NJZ3 312 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 M0QYG6 137 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 ARPC1BO15143 372 aaKnown RBP13.8□□□□□ -0.2
CPSF1-213ENST00000620219 RAB3DO95716 219 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 AMY2BP19961 511 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 THBS2P35442 1172 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 PSG4Q00888 419 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 SF3B4Q15427 424 aaKnown RBP eCLIP13.8□□□□□ -0.26e-7■■■■□ 22
CPSF1-213ENST00000620219 PRR14LQ5THK1 2151 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 GGNQ86UU5 652 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 C20orf196Q8IYI0 205 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 MUCL1Q96DR8 90 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 SULT1B1O43704 296 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 LHX2P50458 406 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 CASP6P55212 293 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 PCK2Q16822 640 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 ZC4H2Q9NQZ6 224 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 KCNMB2Q9Y691 235 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 NCOA6Q14686 2063 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-213ENST00000620219 ECDO95905 644 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-213ENST00000620219 ATP1B3P54709 279 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 SNRPD2P62316 118 aaKnown RBP13.8□□□□□ -0.2
CPSF1-213ENST00000620219 BTN2A1Q7KYR7 527 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 DTX1Q86Y01 620 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 PPP1R14BQ96C90 147 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 CNTD2Q9H8S5 307 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 ZNF850A8MQ14 1090 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 STOMP27105 288 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 FABP6P51161 128 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 FAM27BQ5VT28 67 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 NUDCD2Q8WVJ2 157 aa13.8□□□□□ -0.2
CPSF1-213ENST00000620219 NRASP01111 189 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 RNFT1Q5M7Z0 435 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 DRAM2Q6UX65 266 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 ADAMTS17Q8TE56 1095 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 AKAP1Q92667 903 aaKnown RBP eCLIP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 UPRTQ96BW1 309 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 RAB3CQ96E17 227 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 FZR1Q9UM11 496 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 ETV7Q9Y603 341 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 TRGV8A0A0C4DH27 118 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 ZNF736B4DX44 427 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 CYTIPO60759 359 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 ATP6V1G1O75348 118 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 CRYABP02511 175 aaKnown RBP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 GAAP10253 952 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 CLDN18P56856 261 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 OR5T2Q8NGG2 359 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 OR5L1Q8NGL2 311 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 OR2H1Q9GZK4 316 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 GPN1Q9HCN4 374 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 FANCFQ9NPI8 374 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 AGFG2O95081 481 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 GCH1P30793 250 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 FOXG1P55316 489 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 TBC1D28Q2M2D7 210 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 TRAPPC6BQ86SZ2 158 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 ZFP62Q8NB50 900 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-213ENST00000620219 KCNG3Q8TAE7 436 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 MAFIPQ8WZ33 124 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 SCP2D1Q9UJQ7 156 aa13.79□□□□□ -0.2
CPSF1-213ENST00000620219 HPNP05981 417 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 OR3A4PP47883 348 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 TAF9Q16594 264 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 H3F3CQ6NXT2 135 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 ZIC4Q8N9L1 334 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 ABHD17AQ96GS6 310 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 MICU1Q9BPX6 476 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 TCRBP04435 133 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 GNB3P16520 340 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 ACTBP60709 375 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 ACTG1P63261 375 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 CDRT15L2A8MXV6 281 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 FAM87AP0C7U9 286 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms