RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 A6NDX4 124 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 H0YAE9 185 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 IFI30P13284 250 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 POU1F1P28069 291 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 CRYBA2P53672 197 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 GMFBP60983 142 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 IFFO1Q0D2I5 559 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 MALLQ13021 153 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 SELPLGQ14242 412 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 KRTAP27-1Q3LI81 207 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 ZFAND6Q6FIF0 208 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 C10orf99Q6UWK7 81 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 LHFPL4Q7Z7J7 247 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 WDR86Q86TI4 376 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 MRPL41Q8IXM3 137 aaKnown RBP9.45□□□□□ -0.9
CLK3-222ENST00000568232 LNX2Q8N448 690 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 GJC3Q8NFK1 279 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 OR9Q1Q8NGQ5 310 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 SLC26A7Q8TE54 656 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 SLC22A4Q9H015 551 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 HDHD2Q9H0R4 259 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 SYT4Q9H2B2 425 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 ELL3Q9HB65 397 aaPredicted RBP9.45□□□□□ -0.9
CLK3-222ENST00000568232 PALMDQ9NP74 551 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 SNTG1Q9NSN8 517 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 GRHPRQ9UBQ7 328 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 ZNF391Q9UJN7 358 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 TSSC4Q9Y5U2 329 aaPredicted RBP9.45□□□□□ -0.9
CLK3-222ENST00000568232 PCLOQ9Y6V0 5065 aa9.45□□□□□ -0.9
CLK3-222ENST00000568232 H0YHG0 523 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 XKRYO14609 159 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 KHDRBS3O75525 346 aaKnown RBP9.44□□□□□ -0.9
CLK3-222ENST00000568232 OR5F1O95221 314 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CLIC3O95833 236 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 VIMP08670 466 aaKnown RBP9.44□□□□□ -0.9
CLK3-222ENST00000568232 CENPAP49450 140 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 GSK3BP49841 420 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 ERVFRD-1P60508 538 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CSNK2BP67870 215 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 DGCR2P98153 550 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 ZNF92Q03936 586 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 BLMHQ13867 455 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CYP51A1Q16850 503 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 DGUOKQ16854 277 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 RABL3Q5HYI8 236 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 ADAMTSL5Q6ZMM2 481 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CFAP77Q6ZQR2 320 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 KRT77Q7Z794 578 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CENPVQ7Z7K6 275 aaPredicted RBP9.44□□□□□ -0.9
CLK3-222ENST00000568232 MKXQ8IYA7 352 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 OR13C2Q8NGS9 318 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 OR2AE1Q8NHA4 323 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 SPDL1Q96EA4 605 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 PAIP2Q9BPZ3 127 aaKnown RBP9.44□□□□□ -0.9
CLK3-222ENST00000568232 GPR61Q9BZJ8 451 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 CORO2BQ9UQ03 480 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 NOP16Q9Y3C1 178 aaKnown RBP9.44□□□□□ -0.9
CLK3-222ENST00000568232 HERC2O95714 4834 aa9.44□□□□□ -0.9
CLK3-222ENST00000568232 GGT3PA6NGU5 568 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 NKX6-3A6NJ46 265 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 POLR3GO15318 223 aaPredicted RBP9.43□□□□□ -0.9
CLK3-222ENST00000568232 IFNW1P05000 195 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 NDUFB7P17568 137 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 GGT2P36268 569 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 OR1E2P47887 323 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 SLC9A3P48764 834 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 KCNMB1Q16558 191 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 SNAI3Q3KNW1 292 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 KHDC1LQ5JSQ8 128 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 ATPAF1Q5TC12 328 aaPredicted RBP9.43□□□□□ -0.9
CLK3-222ENST00000568232 STUMQ69YW2 141 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 WDR82Q6UXN9 313 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 DLEU7Q6UYE1 221 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 ETV3LQ6ZN32 361 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 PATL1Q86TB9 770 aaKnown RBP9.43□□□□□ -0.9
CLK3-222ENST00000568232 OAFQ86UD1 273 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 Q8NFD4 153 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 OR5D13Q8NGL4 314 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 TSSK2Q96PF2 358 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 GAFA1Q96PS6 74 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 PRR25Q96S07 402 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 NUAK2Q9H093 628 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 WDR13Q9H1Z4 485 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 RNPEPL1Q9HAU8 725 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 MRPL15Q9P015 296 aaKnown RBP9.43□□□□□ -0.9
CLK3-222ENST00000568232 CCDC167Q9P0B6 97 aa9.43□□□□□ -0.9
CLK3-222ENST00000568232 SLC25A10Q9UBX3 287 aaPredicted RBP9.43□□□□□ -0.9
CLK3-222ENST00000568232 VGLL3A8MV65 326 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 BHLHE40O14503 412 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 JUNBP17275 347 aaPredicted RBP9.42□□□□□ -0.9
CLK3-222ENST00000568232 COX7A1P24310 79 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 SDHAP31040 664 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 LGALS4P56470 323 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 MTPNP58546 118 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 TRAP1Q12931 704 aaKnown RBP9.42□□□□□ -0.9
CLK3-222ENST00000568232 UNQ9370/PRO34162Q6UXP9 181 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 FAM122BQ7Z309 247 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 LINC00346Q8IVM7 164 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 NRMQ8IXM6 262 aa9.42□□□□□ -0.9
CLK3-222ENST00000568232 FAM185AQ8N0U4 392 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 452.6 ms