RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 OR12D2P58182 307 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 SIRPAP78324 504 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ADAM8P78325 824 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 TSTQ16762 297 aaKnown RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 KRTAP27-1Q3LI81 207 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 FAM27BQ5VT28 67 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 NSUN5P2Q63ZY6 315 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 SLC25A24Q6NUK1 477 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 Q6ZSR3 168 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 RFPL4BQ6ZWI9 263 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 LINGO2Q7L985 606 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 UBQLNLQ8IYU4 475 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 MS4A15Q8N5U1 240 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 SYT14Q8NB59 555 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 OR10S1Q8NGN2 331 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 OR6N2Q8NGY6 317 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 FNDC9Q8TBE3 224 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 DYNC2LI1Q8TCX1 351 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ROBO4Q8WZ75 1007 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 GCDHQ92947 438 aaPredicted RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 OTULINQ96BN8 352 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ZFP3Q96NJ6 502 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 TTYH2Q9BSA4 534 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 NXF2Q9GZY0 626 aaKnown RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 SLCO5A1Q9H2Y9 848 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 NIPAL2Q9H841 368 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 ZNF835Q9Y2P0 537 aa7.38□□□□□ -1.23
VPS29-203ENST00000546588 SIRT4Q9Y6E7 314 aaPredicted RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 URB1O60287 2271 aaKnown RBP7.38□□□□□ -1.23
VPS29-203ENST00000546588 SHANK1Q9Y566 2161 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ANKRD11Q6UB99 2663 aaPredicted RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 PIEZO1Q92508 2521 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 LOC390937A0A1W2PQ73 354 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 XKRY2A2RUG3 117 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SLC22A20A6NK97 555 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 F2RL2O00254 374 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ZNF593O00488 134 aaPredicted RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 AIREO43918 545 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 WDR1O75083 606 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 GPX5O75715 221 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SERPINI2O75830 405 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 IGLV3-1P01715 115 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ISG15P05161 165 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TMIGD3P0DMS9 266 aaPredicted RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 GABRA1P14867 456 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 MSR1P21757 451 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 OR3A2P47893 321 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 PRRX1P54821 245 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 RPS11P62280 158 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS29-203ENST00000546588 ENDOGQ14249 297 aaKnown RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 SGCAQ16586 387 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ACSF3Q4G176 576 aaPredicted RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 C6orf183Q5T699 404 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 LIPNQ5VXI9 398 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 LIPKQ5VXJ0 399 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 AAED1Q7RTV5 226 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TMEM200AQ86VY9 491 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TPRA1Q86W33 373 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 GHDCQ8N2G8 530 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 C11orf40Q8WZ69 217 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 THRSPQ92748 146 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TRMT61AQ96FX7 289 aaKnown RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 DIRC2Q96SL1 478 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 AMELYQ99218 206 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ABHD6Q9BV23 337 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 DEFB127Q9H1M4 99 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 C1orf198Q9H425 327 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 EXO5Q9H790 373 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 CNTD2Q9H8S5 307 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 MOB1AQ9H8S9 216 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SP140LQ9H930 580 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SNTG1Q9NSN8 517 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SLC35D1Q9NTN3 355 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 ACOXLQ9NUZ1 547 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TMEM38BQ9NVV0 291 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 CCDC59Q9P031 241 aaKnown RBP7.37□□□□□ -1.23
VPS29-203ENST00000546588 SPATA2Q9UM82 520 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 SPTBN4Q9H254 2564 aa7.37□□□□□ -1.23
VPS29-203ENST00000546588 TRBV5-5A0A0J9YX44 114 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 TVP23AA6NH52 213 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 TMEM210A6NLX4 147 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 TMEM212A6NML5 194 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 OR4C45A6NMZ5 311 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 ZNF878C9JN71 531 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 E9PI62 339 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 NDUFA2O43678 99 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 MRPL33O75394 65 aaKnown RBP7.36□□□□□ -1.23
VPS29-203ENST00000546588 GATBO75879 557 aaKnown RBP7.36□□□□□ -1.23
VPS29-203ENST00000546588 SNAPINO95295 136 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 GPANK1O95872 356 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 TGM6O95932 706 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 IL1AP01583 271 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 KRT8P05787 483 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 CST2P09228 141 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 CD37P11049 281 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 ZNF823P16415 610 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 CELP19835 753 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 COX5AP20674 150 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 TIMP3P35625 211 aa7.36□□□□□ -1.23
VPS29-203ENST00000546588 ZNF84P51523 738 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms