RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 OR10K2Q6IF99 312 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 CORO6Q6QEF8 472 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 NUFIP2Q7Z417 695 aaKnown RBP17.28■□□□□ 0.36
UPF1-201ENST00000262803 SUMF1Q8NBK3 374 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 A0A0A6YYD5 115 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 TMEM235A6NFC5 223 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 TNFSF11O14788 317 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ALX3O95076 343 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 IGHV3-9P01782 118 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 AGFG1P52594 562 aaKnown RBP17.28■□□□□ 0.36
UPF1-201ENST00000262803 GNB1P62873 340 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 AVPI1Q5T686 147 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 BTNL8Q6UX41 500 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 NPEPL1Q8NDH3 523 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 UFSP2Q9NUQ7 469 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 MTCH1Q9NZJ7 389 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 SHROOM3Q8TF72 1996 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 KIAA1551Q9HCM1 1747 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 A0A0A6YYJ9 748 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ALOX5APP20292 161 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 COX5AP20674 150 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 AGERQ15109 404 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 OR1C1Q15619 314 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 BHLHA9Q7RTU4 235 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ISG20L2Q9H9L3 353 aaKnown RBP17.28■□□□□ 0.36
UPF1-201ENST00000262803 GLRX2Q9NS18 164 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 TTC3P53804 2025 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 TMEM30CPA0ZSE6 113 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 PRKNO60260 465 aaPredicted RBP17.27■□□□□ 0.36
UPF1-201ENST00000262803 UBE2IP63279 158 aaKnown RBP17.27■□□□□ 0.36
UPF1-201ENST00000262803 TESK1Q15569 626 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 IGFBP7Q16270 282 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 LHX8Q68G74 356 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 OSR2Q8N2R0 312 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.27■□□□□ 0.36
UPF1-201ENST00000262803 OIP5O43482 229 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 CYTIPO60759 359 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 SLC38A6Q8IZM9 456 aa17.27■□□□□ 0.36
UPF1-201ENST00000262803 PPM1DO15297 605 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 BAK1Q16611 211 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 PRSS36Q5K4E3 855 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 C17orf78Q8N4C9 275 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 APH1BQ8WW43 257 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 SRRQ9GZT4 340 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 MED9Q9NWA0 146 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 SLCO1C1Q9NYB5 712 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 FUT7Q11130 342 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 C8orf44Q96CB5 159 aa17.27■□□□□ 0.35
UPF1-201ENST00000262803 GDF2Q9UK05 429 aaPredicted RBP17.27■□□□□ 0.35
UPF1-201ENST00000262803 SNRPGP15A8MWD9 76 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 GABRG2P18507 467 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 MDH2P40926 338 aaKnown RBP17.26■□□□□ 0.35
UPF1-201ENST00000262803 SSPNQ14714 243 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 ZNF766Q5HY98 468 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 SSX8Q7RTT4 187 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 MSRB3Q8IXL7 192 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 C12orf10Q9HB07 376 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 RNF165Q6ZSG1 346 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 HES4Q9HCC6 221 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 BRWD1Q9NSI6 2320 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 ASCC3Q8N3C0 2202 aaKnown RBP17.26■□□□□ 0.35
UPF1-201ENST00000262803 KIR2DS2P43631 304 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 CLDN20P56880 219 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 C4orf17Q53FE4 359 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 PINX1Q96BK5 328 aaKnown RBP17.26■□□□□ 0.35
UPF1-201ENST00000262803 GALMQ96C23 342 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 MFRPQ9BY79 579 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 SLC17A5Q9NRA2 495 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 SIRT5Q9NXA8 310 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 PAPPA2Q9BXP8 1791 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 CRYBA1P05813 215 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 EMDP50402 254 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 FOXC1Q12948 553 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 FAAP20Q6NZ36 180 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 FOXB1Q99853 325 aa17.26■□□□□ 0.35
UPF1-201ENST00000262803 TRAV1-2A0A0B4J238 106 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 YIF1AO95070 293 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 FOXF1Q12946 379 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 C17orf107Q6ZR85 190 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 ACOT7LQ6ZUV0 252 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 OR2W3Q7Z3T1 314 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 BTLAQ7Z6A9 289 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 TPPP3Q9BW30 176 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 ZNF416Q9BWM5 594 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 PPIL1Q9Y3C6 166 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 AMMECR1Q9Y4X0 333 aaPredicted RBP17.25■□□□□ 0.35
UPF1-201ENST00000262803 KCNJ3P48549 501 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 SLC25A1P53007 311 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 LIMS2Q7Z4I7 341 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 SIGLEC11Q96RL6 698 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 PLA2G12AQ9BZM1 189 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 BCORQ6W2J9 1755 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 FAM122CQ6P4D5 195 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 SFT2D1Q8WV19 159 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 NMES1Q9C002 83 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 FLVCR2Q9UPI3 526 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 CHEK1O14757 476 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 CTRB1P17538 263 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 MPLP40238 635 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 KIAA0040Q15053 153 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms