RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 CACNA1EQ15878 2313 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 ARHGEF17Q96PE2 2063 aaPredicted RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 CNOT1A5YKK6 2376 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 METTL21EPA6NDL7 271 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 SOX1O00570 391 aaPredicted RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 CCSO14618 274 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 BGLAPP02818 100 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 CTSEP14091 401 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 MUC1P15941 1255 aaPredicted RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 FSTP19883 344 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 RPL27P61353 136 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 SRSF4Q08170 494 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 MFGE8Q08431 387 aaPredicted RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 EIF2B1Q14232 305 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 ELOCQ15369 112 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 NKPD1Q17RQ9 610 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 RNASE10Q5GAN6 216 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 C1QL3Q5VWW1 255 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 SLC29A4Q7RTT9 530 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 OR13C8Q8NGS7 320 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 MRPL38Q96DV4 380 aaKnown RBP7.8□□□□□ -1.16
VCL-207ENST00000624354 SLC6A7Q99884 636 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 KLHDC3Q9BQ90 382 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 EGLN1Q9GZT9 426 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 OPA3Q9H6K4 179 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 HHLA2Q9UM44 414 aa7.8□□□□□ -1.16
VCL-207ENST00000624354 TMEM235A6NFC5 223 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 DBX1A6NMT0 343 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 FGF16O43320 207 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 CLPSP04118 112 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 LIPCP11150 499 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 IGFBP3P17936 291 aaPredicted RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 RABIFP47224 123 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 PRKXP51817 358 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SPOCK1Q08629 439 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 NKAPLQ5M9Q1 402 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 CD163Q86VB7 1156 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 CATSPERDQ86XM0 798 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 FAM160A2Q8N612 972 aaPredicted RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 OR13C3Q8NGS6 347 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SLC39A7Q92504 469 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 HIST1H2BAQ96A08 127 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SLC46A1Q96NT5 459 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 ABHD6Q9BV23 337 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 GGACTQ9BVM4 153 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 PNO1Q9NRX1 252 aaKnown RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 MRPL22Q9NWU5 206 aaKnown RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 HS3ST3A1Q9Y663 406 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 COL4A2P08572 1712 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 FITM1A5D6W6 292 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 RNF222A6NCQ9 220 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 MT-ATP6P00846 226 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 AGAP20933 346 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 LAP3P28838 519 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 GALNSP34059 522 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SLC37A1P57057 533 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 INSM1Q01101 510 aaPredicted RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 ZNF117Q03924 483 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 C1orf61Q13536 156 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SSX2Q16385 188 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SGCBQ16585 318 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 GFOD2Q3B7J2 385 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 VWA2Q5GFL6 755 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 OR52W1Q6IF63 320 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 OR10K2Q6IF99 312 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 UNQ6126/PRO20091Q6UXV3 157 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 LYG2Q86SG7 212 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 PRR22Q8IZ63 422 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 SLC22A18ASQ8N1D0 253 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 INO80EQ8NBZ0 244 aaPredicted RBP7.79□□□□□ -1.16
VCL-207ENST00000624354 OR4S1Q8NGB4 309 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 OR51A2Q8NGJ7 313 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 C8orf44Q96CB5 159 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 CLCC1Q96S66 551 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 OR8D2Q9GZM6 311 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 MMP26Q9NRE1 261 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 ASH2LQ9UBL3 628 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 KLK13Q9UKR3 277 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 LRP12Q9Y561 859 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 C2orf16Q68DN1 1984 aa7.79□□□□□ -1.16
VCL-207ENST00000624354 LOC100509620A0A075B734 347 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 NUDT21O43809 227 aaKnown RBP7.78□□□□□ -1.16
VCL-207ENST00000624354 DOK2O60496 412 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 DCNP07585 359 aaKnown RBP7.78□□□□□ -1.16
VCL-207ENST00000624354 OR8U8P0C7N1 319 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 CTLA4P16410 223 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 RCC1P18754 421 aaPredicted RBP7.78□□□□□ -1.16
VCL-207ENST00000624354 PAX6P26367 422 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 ATP1B3P54709 279 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 IL13RA1P78552 427 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 MOGAT2Q3SYC2 334 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 MDGA2Q7Z553 956 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 SLC25A42Q86VD7 318 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 FRMD1Q8N878 549 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 ZNF321PQ8N8H1 164 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 ACBD4Q8NC06 268 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 OR4A4PQ8NGN8 299 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 NKD1Q969G9 470 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 TCTN2Q96GX1 697 aa7.78□□□□□ -1.16
VCL-207ENST00000624354 GAL3ST4Q96RP7 486 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms