RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 KIAA0141Q14154 515 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 CISD2Q8N5K1 135 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MRPS24Q96EL2 167 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ARV1Q9H2C2 271 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 H7BYZ3 331 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 DOK2O60496 412 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SMIM6P0DI80 62 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 EMP3P54852 163 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 RPS23P62266 143 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SQSTM1Q13501 440 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 C19orf35Q6ZS72 473 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MSRB3Q8IXL7 192 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 IFT22Q9H7X7 185 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 PI4KAP42356 2102 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BCAT2O15382 392 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MAGEB4O15481 346 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 IGHA1P01876 353 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 GDF1P27539 372 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 PNPLA1Q8N8W4 532 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF75AQ96N20 296 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 LYRM2Q9NU23 88 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF586Q9NXT0 402 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 NTNG1Q9Y2I2 539 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 OR8U8P0C7N1 319 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 NAT2P11245 290 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 PTHLHP12272 177 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 C2orf76Q3KRA6 126 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF626Q68DY1 528 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 CPEB3Q8NE35 698 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 FBLIM1Q8WUP2 373 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MITD1Q8WV92 249 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SEC22AQ96IW7 307 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 RTL8AQ9BWD3 113 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ACTR3CQ9C0K3 210 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF223Q9UK11 482 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 HOXA1P49639 335 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SYT9Q86SS6 491 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 NMES1Q9C002 83 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 GALNSP34059 522 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BAXQ07812 192 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 PNRC1Q12796 327 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 KIAA0040Q15053 153 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF385BQ569K4 471 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 DLK2Q6UY11 383 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MARVELD3Q96A59 401 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 RNF167Q9H6Y7 350 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 NIT2Q9NQR4 276 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 GAR1Q9NY12 217 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SIGLEC7Q9Y286 467 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 RTTNQ86VV8 2226 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MPPED1O15442 326 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 CD37P11049 281 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SCGB2A2Q13296 93 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BTNL8Q6UX41 500 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 LSRQ86X29 649 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BAGE3Q86Y29 109 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BAGE2Q86Y30 109 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 TVP23CQ96ET8 276 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 C12orf57Q99622 126 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 MGAMO43451 1857 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 BHLHE40O14503 412 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 ADH4P08319 380 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 THBS4P35443 961 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 WNT3P56703 355 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 CLDN15P56746 228 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM81Q6P7N7 255 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 OR5M8Q8NGP6 311 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 CRLF2Q9HC73 371 aa9.34□□□□□ -0.92
CCDC88A-202ENST00000336838 RAB27BO00194 218 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ALOX12BO75342 701 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 COX5AP20674 150 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 AKR1C1Q04828 323 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 GPNMBQ14956 572 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ACKR1Q16570 336 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 OR51I2Q9H344 312 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 STARD5Q9NSY2 213 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 A0A0U1RQS6 177 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 B4DEV8 164 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ALOX5APP20292 161 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 MDH2P40926 338 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 CDONQ4KMG0 1287 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF425Q6IV72 752 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF683Q8IZ20 524 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 HSD17B11Q8NBQ5 300 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 HGDQ93099 445 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 TMPRSS13Q9BYE2 586 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 OR10A3P58181 314 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 SHEQ5VZ18 495 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 SYT13Q7L8C5 426 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 KLHDC1Q8N7A1 406 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ASB16Q96NS5 453 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 OBP2BQ9NPH6 170 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 NOSIPQ9Y314 301 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 TRBV5-3A0A0A0MS03 114 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 FCGR2CP31995 323 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ARG2P78540 354 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 PTX4Q96A99 478 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 MUCL1Q96DR8 90 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 IRF3Q14653 427 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 COL13A1Q5TAT6 717 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms