RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ISYNA1Q9NPH2 558 aa10.28□□□□□ -0.76
LDLR-212ENST00000560467 MRPL22Q9NWU5 206 aaKnown RBP10.28□□□□□ -0.76
LDLR-212ENST00000560467 TAS2R16Q9NYV7 291 aa10.28□□□□□ -0.76
LDLR-212ENST00000560467 ASH2LQ9UBL3 628 aa10.28□□□□□ -0.76
LDLR-212ENST00000560467 CLEC2DQ9UHP7 191 aa10.28□□□□□ -0.76
LDLR-212ENST00000560467 MED12LQ86YW9 2145 aa10.28□□□□□ -0.76
LDLR-212ENST00000560467 SMIM31A0A1B0GVY4 71 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 TRIM64CA6NLI5 447 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 GPANK1O95872 356 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 PLAUP00749 431 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 PTHP01270 115 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 HTR1AP08908 422 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 SMIM18P0DKX4 95 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 B4GALT1P15291 398 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 HCCSP53701 268 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ATP5J2P56134 94 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 GRB2P62993 217 aaKnown RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 BDH1Q02338 343 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 TNK1Q13470 666 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 IRF3Q14653 427 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 GUSBP1Q15486 140 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 MEP1BQ16820 701 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ZNF829Q3KNS6 432 aaPredicted RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 CCDC58Q4VC31 144 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 PHYHD1Q5SRE7 291 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 SYT6Q5T7P8 510 aaPredicted RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 TFAP2EQ6VUC0 442 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 FOXL2NBQ6ZUU3 175 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ZNF679Q8IYX0 411 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 OR52N5Q8NH56 324 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 TMEM171Q8WVE6 324 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 SPRYD4Q8WW59 207 aaPredicted RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 SGCDQ92629 289 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 SPTSSAQ969W0 71 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ABHD6Q9BV23 337 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ZNF416Q9BWM5 594 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 EMC7Q9NPA0 242 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 ZNF701Q9NV72 531 aaPredicted RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 CYB5R1Q9UHQ9 305 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 GDF2Q9UK05 429 aaPredicted RBP10.27□□□□□ -0.77
LDLR-212ENST00000560467 FBXL3Q9UKT7 428 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 UGT2A1Q9Y4X1 527 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 MXRA5Q9NR99 2828 aa10.27□□□□□ -0.77
LDLR-212ENST00000560467 NBEAL1Q6ZS30 2694 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 IGKV1D-43A0A0B4J1Z2 117 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 IQCMA0A1B0GVH7 501 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 ZNF878C9JN71 531 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 CCRL2O00421 344 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 INMTO95050 263 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 UBL3O95164 117 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 SCG5P05408 212 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 TFAP2AP05549 437 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 CD79AP11912 226 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 PAX1P15863 534 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 IL32P24001 234 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 PSMA1P25786 263 aaKnown RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 NTF4P34130 210 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 ROM1Q03395 351 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 MLLT11Q13015 90 aaPredicted RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 GPR50Q13585 617 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 TRAM1Q15629 374 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 PCK2Q16822 640 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 CDONQ4KMG0 1287 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 BEX5Q5H9J7 111 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 C1QTNF12Q5T7M4 302 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 C9orf135Q5VTT2 229 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 RPL22L1Q6P5R6 122 aaKnown RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 VASH1Q7L8A9 365 aaPredicted RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 SSX8Q7RTT4 187 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 KLBQ86Z14 1044 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 LINC00346Q8IVM7 164 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 C1orf162Q8NEQ5 155 aaPredicted RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 SMAP2Q8WU79 429 aaPredicted RBP10.26□□□□□ -0.77
LDLR-212ENST00000560467 MUL1Q969V5 352 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 SLAMF6Q96DU3 332 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 C4orf36Q96KX1 117 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 OR8B4Q96RC9 309 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 SH3GL3Q99963 347 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 FAM192AQ9GZU8 254 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 HDHD2Q9H0R4 259 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 CXorf56Q9H5V9 222 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 ELOVL3Q9HB03 270 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 PLEK2Q9NYT0 353 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 PRSS50Q9UI38 385 aa10.26□□□□□ -0.77
LDLR-212ENST00000560467 A0A096LPE4 126 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 TRBV2A0A0J9YWF9 115 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 A0A1W2PPZ6 126 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 RNF212BA8MTL3 300 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 RNF223E7ERA6 249 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 HS3ST1O14792 307 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 SGCEO43556 437 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 RPP14O95059 124 aaKnown RBP10.25□□□□□ -0.77
LDLR-212ENST00000560467 WNT11O96014 354 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 SERPINA3P01011 423 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 LCKP06239 509 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 PCMT1P22061 227 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 OR12D2P58182 307 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 ZNF85Q03923 595 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 ACSM1Q08AH1 577 aa10.25□□□□□ -0.77
LDLR-212ENST00000560467 RAB39AQ14964 217 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms