RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OR13C5Q8NGS8 318 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 FGFBP3Q8TAT2 258 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 SPTSSAQ969W0 71 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC25A46Q96AG3 418 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 DERL3Q96Q80 235 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 B3GNT2Q9NY97 397 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 PROCRQ9UNN8 238 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC22A13Q9Y226 551 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC5A6Q9Y289 635 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 PMF1-BGLAPU3KQ54 211 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 A0A0U1RQV5 110 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 SHISA3A0PJX4 238 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 ANKRD61A6NGH8 418 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 DOK2O60496 412 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 CLPXO76031 633 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 UBL3O95164 117 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 TTRP02766 147 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 IGHV1-2P23083 117 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 RPS19P39019 145 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 CX3CR1P49238 355 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 PER3P56645 1201 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF121P58317 390 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF774Q6NX45 483 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF433Q8N7K0 673 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 NAXEQ8NCW5 288 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 CCDC54Q8NEL0 328 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 NANOS1Q8WY41 292 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 OR14A2Q96R54 314 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 TSC22D3Q99576 134 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 PBOV1Q9GZY1 135 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 PPIL3Q9H2H8 161 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 HHLA2Q9UM44 414 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 MED12LQ86YW9 2145 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 DOCK7Q96N67 2140 aa13.03□□□□□ -0.32
CCDC88C-202ENST00000334448 A0A075B6Q4 140 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 M0R135 149 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 DVL2O14641 736 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 PIN1P1O15428 100 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 TMEM127O75204 238 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 CDRT1O95170 752 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 ACSM4P0C7M7 580 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 CFL1P23528 166 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 SDC2P34741 201 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 GABRA6Q16445 453 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 TBRG1Q3YBR2 411 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 TMEM53Q6P2H8 277 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 BEND4Q6ZU67 534 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 RPRMLQ8N4K4 120 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 PLPP7Q8NBV4 271 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 OR52H1Q8NGJ2 320 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 ITFG2Q969R8 447 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF799Q96GE5 643 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 PIGMQ9H3S5 423 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 SP140LQ9H930 580 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 OBP2BQ9NPH6 170 aa13.02□□□□□ -0.33
CCDC88C-202ENST00000334448 NCOA6Q14686 2063 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A1B0GTI1 187 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 IQCMA0A1B0GVH7 501 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 LOC107986453A0A1B0GWG9 222 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 MSTNO14793 375 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 OCM2P0CE71 109 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 FSTP19883 344 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 MYL9P24844 172 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 CALRP27797 417 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 OPRM1P35372 400 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 SOX6P35712 828 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 HTR5AP47898 357 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 RORCP51449 518 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 PRKXP51817 358 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 TPTEP56180 551 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF404Q494X3 552 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 HSD17B12Q53GQ0 312 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 PABPC1L2AQ5JQF8 200 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 COLCA1Q6ZS62 124 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 CROCCP3Q8IVE0 287 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF283Q8N7M2 679 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 OR8B12Q8NGG6 310 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 OR10AC1Q8NH08 325 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ASB5Q8WWX0 329 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF75AQ96N20 296 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 DMRTA2Q96SC8 542 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 BARHL1Q9BZE3 327 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 MMP27Q9H306 513 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZCCHC4Q9H5U6 513 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 SNTG1Q9NSN8 517 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF629Q9UEG4 869 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF391Q9UJN7 358 aa13.01□□□□□ -0.33
CCDC88C-202ENST00000334448 CACNA1CQ13936 2221 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A096LPE4 126 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A1W2PPZ6 126 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF503-AS2A6NEH8 195 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 E9PLN8 166 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 ICMTO60725 284 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 HLA-HP01893 362 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 CFPP27918 469 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 DYNC1I2Q13409 638 aaKnown RBP13□□□□□ -0.33
CCDC88C-202ENST00000334448 FAM27D1Q5T7N8 215 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 C9orf135Q5VTT2 229 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 FAM169BQ8N8A8 192 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 CPEB3Q8NE35 698 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms