RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZMAT1Q5H9K5 638 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 PAMR1Q6UXH9 720 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 GFRALQ6UXV0 394 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 ZNF676Q8N7Q3 588 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 CNEP1R1Q8N9A8 125 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 FGFBP3Q8TAT2 258 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 PPP1R14AQ96A00 147 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 PPIL3Q9H2H8 161 aaKnown RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 PLEK2Q9NYT0 353 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 CCDC59Q9P031 241 aaKnown RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 ZNF835Q9Y2P0 537 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 TIMM10BQ9Y5J6 103 aa16.14■□□□□ 0.17
CLN3-254ENST00000637050 NCOA6Q14686 2063 aaPredicted RBP16.14■□□□□ 0.17
CLN3-254ENST00000637050 GTF3C1Q12789 2109 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 DOCK7Q96N67 2140 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 FREM1Q5H8C1 2179 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 TRBV5-5A0A0J9YX44 114 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 SGCEO43556 437 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 TNFSF13O75888 250 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 IL18BPO95998 194 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 MMP7P09237 267 aaPredicted RBP16.13■□□□□ 0.17
CLN3-254ENST00000637050 SFTPCP11686 197 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 SDC2P34741 201 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 TIMP3P35625 211 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 EIF2S3LQ2VIR3 472 aaKnown RBP16.13■□□□□ 0.17
CLN3-254ENST00000637050 VWA1Q6PCB0 445 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 PHYHIPQ92561 330 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 ZFP3Q96NJ6 502 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 KCNJ15Q99712 375 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 SLIRPQ9GZT3 109 aaKnown RBP16.13■□□□□ 0.17
CLN3-254ENST00000637050 HDHD2Q9H0R4 259 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 PLSCR4Q9NRQ2 329 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 ZNF224Q9NZL3 707 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 GTF2A1LQ9UNN4 478 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 PMF1-BGLAPU3KQ54 211 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 CACNA1CQ13936 2221 aa16.13■□□□□ 0.17
CLN3-254ENST00000637050 SHISA3A0PJX4 238 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 ZNF879B4DU55 563 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 PRRG2O14669 202 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 SYNGR3O43761 229 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 CDRT1O95170 752 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 UCHL1P09936 223 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 PATE4P0C8F1 98 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 OTX1P32242 354 aaPredicted RBP16.12■□□□□ 0.17
CLN3-254ENST00000637050 PER3P56645 1201 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 PSG4Q00888 419 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 RSPO1Q2MKA7 263 aaPredicted RBP16.12■□□□□ 0.17
CLN3-254ENST00000637050 FAM27D1Q5T7N8 215 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 Q6ZT83 130 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 RDH10Q8IZV5 341 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 RPRMLQ8N4K4 120 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 OR14A2Q96R54 314 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 OR2H1Q9GZK4 316 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 TP63Q9H3D4 680 aaPredicted RBP16.12■□□□□ 0.17
CLN3-254ENST00000637050 MOB1AQ9H8S9 216 aa16.12■□□□□ 0.17
CLN3-254ENST00000637050 A0A096LPE4 126 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 A0A1W2PPZ6 126 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 CLPXO76031 633 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ISG15P05161 165 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 CX3CR1P49238 355 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 MTNR1BP49286 362 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 PRKXP51817 358 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ECH1Q13011 328 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 Q499Y3 187 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 BCL2L15Q5TBC7 163 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ANKRD16Q6P6B7 361 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 BTLAQ7Z6A9 289 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 DOLPP1Q86YN1 238 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 OR1K1Q8NGR3 316 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 OR10AC1Q8NH08 325 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 GPR148Q8TDV2 347 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 WNT5BQ9H1J7 359 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 SNTG1Q9NSN8 517 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 NUFIP1Q9UHK0 495 aaKnown RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 ARPC4-TTLL3A0A0A6YYG9 625 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 OR6C6A6NF89 314 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 DOK2O60496 412 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 SLC19A2O60779 497 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 CGAP01215 116 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 IL2RAP01589 272 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 TMIGD3P0DMS9 266 aaPredicted RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 CRYGSP22914 178 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 CEACAM8P31997 349 aaPredicted RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 ZNF121P58317 390 aaPredicted RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 GALK2Q01415 458 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ODF4Q2M2E3 257 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 SLC36A2Q495M3 483 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ZNF774Q6NX45 483 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ZNF704Q6ZNC4 412 aaPredicted RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 PRSS45Q7RTY3 260 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ELMOD2Q8IZ81 293 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 OR1F12Q8NHA8 337 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 ZFAND2BQ8WV99 257 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 BCL2L2Q92843 193 aaPredicted RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 STARD4Q96DR4 205 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 DERL3Q96Q80 235 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 PBOV1Q9GZY1 135 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 BRD7Q9NPI1 651 aa16.11■□□□□ 0.17
CLN3-254ENST00000637050 SPENQ96T58 3664 aaKnown RBP16.11■□□□□ 0.17
CLN3-254ENST00000637050 ACOD1A6NK06 481 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms