RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	FKBP7	Q9Y680	259 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SON	P18583	2426 aa	Known RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	IGKV3D-15	A0A087WSY6	115 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	IRGM	A1A4Y4	181 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	SELENOF	O60613	162 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	CLPTM1	O96005	669 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	ATP6V1E1	P36543	226 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	CSNK1A1	P48729	337 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	RAB40B	Q12829	278 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	TMED1	Q13445	227 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	BLMH	Q13867	455 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	NEDD8	Q15843	81 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	DNM1P34	Q6PK57	102 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	STAC2	Q6ZMT1	411 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	BEND4	Q6ZU67	534 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	KCTD8	Q6ZWB6	473 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	AAED1	Q7RTV5	226 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	PRSS48	Q7RTY5	328 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	ZBTB46	Q86UZ6	589 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF611	Q8N823	705 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF511	Q8NB15	262 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	OR6N1	Q8NGY5	312 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	NSMAF	Q92636	917 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	NMD3	Q96D46	503 aa	Known RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	TBX5	Q99593	518 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	RACGAP1	Q9H0H5	632 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	OR10A4	Q9H209	315 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	FGF20	Q9NP95	211 aa	Predicted RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	GLRX2	Q9NS18	164 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	MOK	Q9UQ07	419 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	RCE1	Q9Y256	329 aa		11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	EXOG	Q9Y2C4	368 aa	Known RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	COA3	Q9Y2R0	106 aa	Predicted RBP	11.1	□□□□□ -0.63
UPF1-208	ENST00000600012	HS3ST1	O14792	307 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	MRPS14	O60783	128 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC43A1	O75387	559 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	KHDRBS3	O75525	346 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF432	O94892	652 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TF	P02787	698 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TFAP2A	P05549	437 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	SBK2	P0C263	348 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	EDNRA	P25101	427 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	CRABP1	P29762	137 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	ATP5J2	P56134	94 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TUBA4A	P68366	448 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	GGTLC2	Q14390	218 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	IRF3	Q14653	427 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	RNPS1	Q15287	305 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	WFDC8	Q8IUA0	241 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TUSC5	Q8IXB3	177 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	SVOP	Q8N4V2	548 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	OR10H4	Q8NGA5	316 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM54	Q969K7	222 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	MCHR2	Q969V1	340 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM45B	Q96B21	275 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	PLPPR2	Q96GM1	343 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	RBP7	Q96R05	134 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	CNN2	Q99439	309 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM204	Q9BSN7	226 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	TTTY10	Q9BZA0	68 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	ACTR6	Q9GZN1	396 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	BCO1	Q9HAY6	547 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	HAO2	Q9NYQ3	351 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	GLTP	Q9NZD2	209 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	EMC3	Q9P0I2	261 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	CLEC2D	Q9UHP7	191 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	DIMT1	Q9UNQ2	313 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	NOSIP	Q9Y314	301 aa	Known RBP	11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	ABCA1	O95477	2261 aa		11.09	□□□□□ -0.63
UPF1-208	ENST00000600012	FBN3	Q75N90	2809 aa		11.08	□□□□□ -0.63
UPF1-208	ENST00000600012		A0A1W2PPL8	197 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	C12orf71	A8MTZ7	269 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	CENPBD1	B2RD01	187 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012		J3QRE1	110 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	GPR171	O14626	319 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	AHCYL1	O43865	530 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	UPK3A	O75631	287 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	PLAU	P00749	431 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	PTH	P01270	115 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	IGHA1	P01876	353 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	HLA-DQA2	P01906	255 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	QDPR	P09417	244 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	GAA	P10253	952 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	PSKH1	P11801	424 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	PSMB1	P20618	241 aa	Known RBP	11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	PCMT1	P22061	227 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	DCK	P27707	260 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	RPS27	P42677	84 aa	Known RBP	11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	ETV1	P50549	477 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	HCCS	P53701	268 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	EMX1	Q04741	257 aa	Predicted RBP	11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	POU4F2	Q12837	409 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	HIST3H3	Q16695	136 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	MEP1B	Q16820	701 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	THEM4	Q5T1C6	240 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	XAF1	Q6GPH4	301 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	SLC25A47	Q6Q0C1	308 aa		11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	NUFIP2	Q7Z417	695 aa	Known RBP	11.08	□□□□□ -0.64
UPF1-208	ENST00000600012	ERI1	Q8IV48	349 aa	Known RBP	11.08	□□□□□ -0.64

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