RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SIRT4Q9Y6E7 314 aaPredicted RBP7.23□□□□□ -1.25
USP4-210ENST00000483212 SMG1Q96Q15 3661 aaKnown RBP7.23□□□□□ -1.25
USP4-210ENST00000483212 EPG5Q9HCE0 2579 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 ARHGAP21Q5T5U3 1957 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 ZNF503-AS2A6NEH8 195 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 METTL15A6NJ78 407 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 E9PLN8 166 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 PSMD9O00233 223 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 RER1O15258 196 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SRSF10O75494 262 aaKnown RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 SULT1C4O75897 302 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 KRT33AO76009 404 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 MT-ND5P03915 603 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 OR8G3PP0DMU2 310 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 PSMB9P28065 219 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 GTF2A1P52655 376 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 SH3BGRP55822 239 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 PER3P56645 1201 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 BDH1Q02338 343 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 PMPCAQ10713 525 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 AQP6Q13520 282 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 TPBGQ13641 420 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SGCAQ16586 387 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 KRTAP27-1Q3LI81 207 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 CCDC92Q53HC0 331 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 ARMCX4Q5H9R4 360 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 C9orf135Q5VTT2 229 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 FOXB2Q5VYV0 432 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 DEGS2Q6QHC5 323 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 ZNF474Q6S9Z5 364 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 LRRN1Q6UXK5 716 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 TMPRSS11AQ6ZMR5 421 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 ZNF813Q6ZN06 617 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 Q6ZT83 130 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SYT9Q86SS6 491 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 KLBQ86Z14 1044 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SKA3Q8IX90 412 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 ZNF610Q8N9Z0 462 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 RELL2Q8NC24 303 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 THEM6Q8WUY1 208 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 BCL2L2Q92843 193 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 SLAMF6Q96DU3 332 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SH3GL3Q99963 347 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 VKORC1Q9BQB6 163 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 WACQ9BTA9 647 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 OPN3Q9H1Y3 402 aaPredicted RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 NOX3Q9HBY0 568 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 VCX3AQ9NNX9 186 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 BATF3Q9NR55 127 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 DDX28Q9NUL7 540 aaKnown RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 BABAM2Q9NXR7 383 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 JKAMPQ9P055 326 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 UPB1Q9UBR1 384 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 PROCRQ9UNN8 238 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SF3B6Q9Y3B4 125 aaKnown RBP7.22□□□□□ -1.25
USP4-210ENST00000483212 GRIP1Q9Y3R0 1128 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 CEPT1Q9Y6K0 416 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 GTF3C1Q12789 2109 aa7.22□□□□□ -1.25
USP4-210ENST00000483212 SVILO95425 2214 aa7.21□□□□□ -1.25
USP4-210ENST00000483212 FREM1Q5H8C1 2179 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 KMT2BQ9UMN6 2715 aaPredicted RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 TRGV8A0A0C4DH27 118 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 HSPB2A8KAH6 182 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 J3QLW9 94 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 OGG1O15527 345 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 LRRTM2O43300 516 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ZNF254O75437 659 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 CPEP16870 476 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ZNF19P17023 458 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ZNF32P17041 273 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 CAPZA2P47755 286 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 TGM4P49221 684 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 RGS6P49758 472 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 NANOS3P60323 173 aaKnown RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 MRPL49Q13405 166 aaKnown RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 HSPB2Q16082 182 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 GABRA6Q16445 453 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 TSTQ16762 297 aaKnown RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 RSPO1Q2MKA7 263 aaPredicted RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 LIPNQ5VXI9 398 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 DMKNQ6E0U4 476 aaPredicted RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 FDX2Q6P4F2 183 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ANKRD16Q6P6B7 361 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 PLEKHG7Q6ZR37 379 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 RHOUQ7L0Q8 258 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ABHD12BQ7Z5M8 362 aaPredicted RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 KCTD20Q7Z5Y7 419 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 GPR141Q7Z602 305 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 LIX1LQ8IVB5 337 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 PHC2Q8IXK0 858 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ZNF679Q8IYX0 411 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 UBE2J2Q8N2K1 259 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 LRRC18Q8N456 261 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 ZNF433Q8N7K0 673 aaPredicted RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 ZFP41Q8N8Y5 198 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 SNX33Q8WV41 574 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 HSD17B8Q92506 261 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 PGLYRP3Q96LB9 341 aa7.21□□□□□ -1.26
USP4-210ENST00000483212 NAA50Q9GZZ1 169 aaKnown RBP7.21□□□□□ -1.26
USP4-210ENST00000483212 WNT5BQ9H1J7 359 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms