RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 MED4Q9NPJ6 270 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 POLE4Q9NR33 117 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 NDUFAF4Q9P032 175 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 AP3M1Q9Y2T2 418 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 V9GYQ6 96 aa14.19□□□□□ -0.14
USP40-212ENST00000473191 TRBV4-1A0A0J9YWV2 114 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 PTP4A3O75365 173 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 CTLA4P16410 223 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 IFNA8P32881 189 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 MSX2P35548 267 aaPredicted RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 RPL4P36578 427 aaKnown RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 OMPP47874 163 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 LIMS1P48059 325 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 GDI2P50395 445 aaKnown RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 DVL1P1P54792 670 aaPredicted RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 TMEM33P57088 247 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 ZBED5Q49AG3 693 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 GLYATQ6IB77 296 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 TMEM154Q6P9G4 183 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 USP51Q70EK9 711 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 ZNF771Q7L3S4 317 aaPredicted RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 RNF113BQ8IZP6 322 aaKnown RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 KLF14Q8TD94 323 aaPredicted RBP14.18□□□□□ -0.14
USP40-212ENST00000473191 SLC7A6Q92536 515 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 C7orf34Q96L11 122 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 SLCO1C1Q9NYB5 712 aa14.18□□□□□ -0.14
USP40-212ENST00000473191 TEX13CA0A0J9YWL9 993 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 A6NIZ1 184 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 B4DSR2 109 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 CD14P08571 375 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 HNF1AP20823 631 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 MSR1P21757 451 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 THBS2P35442 1172 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 CRYBB2P43320 205 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 ZNF81P51508 661 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 SELENOVP59797 346 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 RAP1BP61224 184 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 RAP1AP62834 184 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 MRPS11P82912 194 aaKnown RBP14.17□□□□□ -0.14
USP40-212ENST00000473191 C1orf229Q6ZS94 237 aaPredicted RBP14.17□□□□□ -0.14
USP40-212ENST00000473191 PTCHD4Q6ZW05 846 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 OR52J3Q8NH60 311 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 SNX33Q8WV41 574 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 MSL2Q9HCI7 577 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 HIF1ANQ9NWT6 349 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 DCAF16Q9NXF7 216 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 GRHPRQ9UBQ7 328 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 SIGLEC7Q9Y286 467 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 TIMM10BQ9Y5J6 103 aa14.17□□□□□ -0.14
USP40-212ENST00000473191 IGHV1-69-2A0A0G2JMI3 117 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 HTR3EA5X5Y0 456 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 AVPP01185 164 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 H1F0P07305 194 aaKnown RBP14.16□□□□□ -0.14
USP40-212ENST00000473191 MSMBP08118 114 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 DRD4P21917 467 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 ERFP50548 548 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 GYS2P54840 703 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 PPP1CBP62140 327 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 ZNF718Q3SXZ3 478 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 FGD3Q5JSP0 725 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 MBNL2Q5VZF2 373 aaKnown RBP14.16□□□□□ -0.14
USP40-212ENST00000473191 FAM205BPQ63HN1 556 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 TMEM186Q96B77 213 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 C4orf45Q96LM5 186 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 ZNF570Q96NI8 536 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 LRRC37BQ96QE4 947 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 FUZQ9BT04 418 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 SYT4Q9H2B2 425 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 RERGLQ9H628 205 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 DCAF13Q9NV06 445 aaKnown RBP14.16□□□□□ -0.14
USP40-212ENST00000473191 NKIRAS2Q9NYR9 191 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 EIF3KQ9UBQ5 218 aaKnown RBP14.16□□□□□ -0.14
USP40-212ENST00000473191 COA3Q9Y2R0 106 aaPredicted RBP14.16□□□□□ -0.14
USP40-212ENST00000473191 WIPI2Q9Y4P8 454 aa14.16□□□□□ -0.14
USP40-212ENST00000473191 PRSS37A4D1T9 235 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 DCTN6O00399 190 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 SOCS2O14508 198 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 TPD52L2O43399 206 aaKnown RBP14.15□□□□□ -0.14
USP40-212ENST00000473191 DEAF1O75398 565 aaPredicted RBP14.15□□□□□ -0.14
USP40-212ENST00000473191 GCH1P30793 250 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 SRP14P37108 136 aaKnown RBP14.15□□□□□ -0.14
USP40-212ENST00000473191 KRR1Q13601 381 aaKnown RBP14.15□□□□□ -0.14
USP40-212ENST00000473191 PCGF3Q3KNV8 242 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 ANKDD1AQ495B1 522 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 GLCCI1Q86VQ1 547 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 TSSK2Q96PF2 358 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 SAP30LQ9HAJ7 183 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 NRIP3Q9NQ35 241 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 DECR2Q9NUI1 292 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 ADA2Q9NZK5 511 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 KLHL21Q9UJP4 597 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 IER3IP1Q9Y5U9 82 aa14.15□□□□□ -0.14
USP40-212ENST00000473191 A0A1W2PRQ8 180 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 GMNCA6NCL1 334 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 SNX3O60493 162 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 DOK2O60496 412 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 SLC16A7O60669 478 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 ICMTO60725 284 aa14.14□□□□□ -0.15
USP40-212ENST00000473191 RGS9O75916 674 aaPredicted RBP14.14□□□□□ -0.15
USP40-212ENST00000473191 UBOX5O94941 541 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms