RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF724A8MTY0 619 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 XPNPEP2O43895 674 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SS18L1O75177 396 aaPredicted RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 PGA4P0DJD7 388 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 PGA3P0DJD8 388 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 DBTP11182 482 aaKnown RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SPI1P17947 270 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 EEF1B2P24534 225 aaKnown RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 CRABP1P29762 137 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 AGTR1P30556 359 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 HTR1FP30939 366 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 NR1H2P55055 460 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 RUNX1T1Q06455 604 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 POU4F2Q12837 409 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SMN1Q16637 294 aaKnown RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 KCTD21Q4G0X4 260 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SLC35D3Q5M8T2 416 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 AADACL4Q5VUY2 407 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 AHSA2Q719I0 299 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 SYT14Q8NB59 555 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 OR6K3Q8NGY3 331 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 PLPPR2Q96GM1 343 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 YTHDF1Q9BYJ9 559 aaKnown RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 ULBP2Q9BZM5 246 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 RACGAP1Q9H0H5 632 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 WARS2Q9UGM6 360 aaKnown RBP10.65□□□□□ -0.7
PTPRF-208ENST00000437607 FKBP7Q9Y680 259 aa10.65□□□□□ -0.7
PTPRF-208ENST00000437607 OR6C65A6NJZ3 312 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 HS3ST1O14792 307 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 SLC16A7O60669 478 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 MRPL33O75394 65 aaKnown RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 KRT33AO76009 404 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 GYPBP06028 91 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 YES1P07947 543 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 RPSAP08865 295 aaKnown RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 CLUP10909 449 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 PYCR1P32322 319 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 ATP6V1E1P36543 226 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 MTNR1AP48039 350 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 SELENOPP49908 381 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 EFNB1P98172 346 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 FMODQ06828 376 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 TMED1Q13445 227 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 TNK1Q13470 666 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 TUSC5Q8IXB3 177 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 TMEM123Q8N131 208 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 GPR137CQ8N3F9 429 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF611Q8N823 705 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF540Q8NDQ6 660 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 LILRB1Q8NHL6 650 aaPredicted RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 TMEM171Q8WVE6 324 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 IPCEF1Q8WWN9 437 aaPredicted RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 APH1AQ96BI3 265 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 RNFT2Q96EX2 444 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 ALKBH3Q96Q83 286 aaPredicted RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 RBP7Q96R05 134 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 CNN2Q99439 309 aaKnown RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 HCAR1Q9BXC0 346 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 NMNAT2Q9BZQ4 307 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF696Q9H7X3 374 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 PARPBPQ9NWS1 579 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 CNOT2Q9NZN8 540 aaKnown RBP10.64□□□□□ -0.71
PTPRF-208ENST00000437607 MOKQ9UQ07 419 aa10.64□□□□□ -0.71
PTPRF-208ENST00000437607 MAGEA13PA6NCF6 341 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CCDC182A6NF36 153 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CRLF1O75462 422 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 KHDRBS3O75525 346 aaKnown RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 GLCEO94923 617 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 HLA-DQA2P01906 255 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 LYNP07948 512 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 PIPP12273 146 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 PPP3CBP16298 524 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CTLA4P16410 223 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 SLC2A5P22732 501 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CRHBPP24387 322 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 GSTT1P30711 240 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CENPAP49450 140 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 BLVRAP53004 296 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 GLO1Q04760 184 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF362Q5T0B9 420 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 THEM4Q5T1C6 240 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 LAIR2Q6ISS4 152 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 MEPCEQ7L2J0 689 aaKnown RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 WFDC8Q8IUA0 241 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 C20orf196Q8IYI0 205 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF100Q8IYN0 542 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 STX19Q8N4C7 294 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ZIC4Q8N9L1 334 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 POMGNT2Q8NAT1 580 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 MAPK1IP1LQ8NDC0 245 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 KISS1RQ969F8 398 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 MYDGFQ969H8 173 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF775Q96BV0 537 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ZMYND19Q96E35 227 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 TSSK2Q96PF2 358 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 COPS4Q9BT78 406 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 MRPL13Q9BYD1 178 aaKnown RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 NUAK2Q9H093 628 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 SLCO5A1Q9H2Y9 848 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 CXorf56Q9H5V9 222 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms