RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 IFNGP01579 166 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 GYPBP06028 91 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 ZNF32P17041 273 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PTAFRP25105 342 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PEX2P28328 305 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 CALCRP30988 508 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PTDSS1P48651 473 aaKnown RBP10.78□□□□□ -0.68
USP40-205ENST00000430158 NR1H2P55055 460 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PSG4Q00888 419 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 HSF2Q03933 536 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PIGFQ07326 219 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 SPOCK1Q08629 439 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 MEP1BQ16820 701 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PCK2Q16822 640 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 GSG1Q2KHT4 349 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 AADACL4Q5VUY2 407 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 ALKBH2Q6NS38 261 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 ADAM5Q6NVV9 412 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 LYPD4Q6UWN0 246 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 SLC16A14Q7RTX9 510 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 SYT9Q86SS6 491 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 CDC20BQ86Y33 519 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 CPOQ8IVL8 374 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 LRRC18Q8N456 261 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 CPEB3Q8NE35 698 aaKnown RBP10.78□□□□□ -0.68
USP40-205ENST00000430158 BBS1Q8NFJ9 593 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 OR2T4Q8NH00 348 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 EME1Q96AY2 570 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 HRASLS5Q96KN8 279 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 PITX2Q99697 317 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 WNT5BQ9H1J7 359 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 RNPEPL1Q9HAU8 725 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 MOV10Q9HCE1 1003 aaKnown RBP10.78□□□□□ -0.68
USP40-205ENST00000430158 NGBQ9NPG2 151 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 TVP23BQ9NYZ1 205 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 ENOPH1Q9UHY7 261 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 LHFPL6Q9Y693 200 aa10.78□□□□□ -0.68
USP40-205ENST00000430158 MAP1AP78559 2803 aaPredicted RBP10.78□□□□□ -0.68
USP40-205ENST00000430158 CREBBPQ92793 2442 aa10.77□□□□□ -0.68
USP40-205ENST00000430158 CSMD1Q96PZ7 3565 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 CCDC182A6NF36 153 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 M0R1B8 84 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 WIPF1O43516 503 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 SNAP29O95721 258 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 SERPINA5P05154 406 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 CD79AP11912 226 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 ZNF35P13682 527 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 ZNF3P17036 446 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 HOXC12P31275 282 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 IDH3GP51553 393 aaPredicted RBP10.77□□□□□ -0.69
USP40-205ENST00000430158 NAAAQ02083 359 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 TEKQ02763 1124 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 HGFACQ04756 655 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 RIPK1Q13546 671 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 RAB39AQ14964 217 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 TRIP10Q15642 601 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 SNAPC1Q16533 368 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 ZIK1Q3SY52 487 aaPredicted RBP10.77□□□□□ -0.69
USP40-205ENST00000430158 PLBD1Q6P4A8 553 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 DNM1P34Q6PK57 102 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 TMEM108Q6UXF1 575 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 OR51L1Q8NGJ5 315 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 NRG4Q8WWG1 115 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 IGFBPL1Q8WX77 278 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 NEUROG1Q92886 237 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 WACQ9BTA9 647 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 OR2H1Q9GZK4 316 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 CLEC4MQ9H2X3 399 aaPredicted RBP10.77□□□□□ -0.69
USP40-205ENST00000430158 TOR3AQ9H497 397 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 RIBC2Q9H4K1 309 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 RERGLQ9H628 205 aa10.77□□□□□ -0.69
USP40-205ENST00000430158 ESRP2Q9H6T0 727 aaKnown RBP10.77□□□□□ -0.69
USP40-205ENST00000430158 NDRG4Q9ULP0 352 aaKnown RBP10.77□□□□□ -0.69
USP40-205ENST00000430158 LOC100509620A0A075B734 347 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 IGHV2OR16-5A0A0B4J2B6 119 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 ABCD4O14678 606 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 SLC16A6O15403 523 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 CD3EP07766 207 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 GABRB1P18505 474 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 RAD23AP54725 363 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 GLO1Q04760 184 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 SLC34A1Q06495 639 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 RSPO1Q2MKA7 263 aaPredicted RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 KRTAP27-1Q3LI81 207 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 SLC36A2Q495M3 483 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 CCDC92Q53HC0 331 aaPredicted RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 PABPC1L2AQ5JQF8 200 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 TEX30Q5JUR7 227 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 LCE2CQ5TA81 110 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 B3GLCTQ6Y288 498 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 ZNF704Q6ZNC4 412 aaPredicted RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 BCDIN3DQ7Z5W3 292 aaKnown RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 PAQR4Q8N4S7 273 aaPredicted RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 PACRGLQ8N7B6 248 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 ZNF511Q8NB15 262 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 KBTBD8Q8NFY9 601 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 AKR7LQ8NHP1 331 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 TMEM163Q8TC26 289 aa10.76□□□□□ -0.69
USP40-205ENST00000430158 NANOS1Q8WY41 292 aaKnown RBP10.76□□□□□ -0.69
USP40-205ENST00000430158 UBE2FQ969M7 185 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms