RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 LEG1Q6P5S2 330 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TRIM65Q6PJ69 517 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 METAP1DQ6UB28 335 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ATRAIDQ6UW56 229 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 BTNL3Q6UXE8 466 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ANGPTL8Q6UXH0 198 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 LANCL3Q6ZV70 420 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CENPQQ7L2Z9 268 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NDUFAF7Q7L592 441 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 APTXQ7Z2E3 356 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TRPM8Q7Z2W7 1104 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 ANKRD37Q7Z713 158 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 MOB3BQ86TA1 216 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 SLC38A6Q8IZM9 456 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 METTL4Q8N3J2 472 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FBXL13Q8NEE6 735 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NUP37Q8NFH4 326 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 OR10G7Q8NGN6 311 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 LMO3Q8TAP4 145 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 AGR3Q8TD06 166 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 RPL3LQ92901 407 aaKnown RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 DLX4Q92988 240 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CAPZA3Q96KX2 299 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 COPS8Q99627 209 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TUBGCP2Q9BSJ2 902 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 CABLES2Q9BTV7 478 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 COMMD4Q9H0A8 199 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 MAGT1Q9H0U3 335 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 XKR8Q9H6D3 395 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 FANCEQ9HB96 536 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PIPOXQ9P0Z9 390 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 GALPQ9UBC7 116 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PCSK1NQ9UHG2 260 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 PROCRQ9UNN8 238 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 NEU3Q9UQ49 428 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TCF19Q9Y242 345 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 IFT52Q9Y366 437 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 WIF1Q9Y5W5 379 aa3.12□□□□□ -1.91
LIMA1-208ENST00000551691 TENM3Q9P273 2699 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 IGHV1-45A0A0A0MS14 117 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 MSGN1A6NI15 193 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 OR6C65A6NJZ3 312 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF716A6NP11 495 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 WRBO00258 174 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 IMPA2O14732 288 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 TFECO14948 347 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 VENTXO95231 258 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 HBQ1P09105 142 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF735P0CB33 412 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 CPN1P15169 458 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF24P17028 368 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 NT5EP21589 574 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 LAP3P28838 519 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 SAA4P35542 130 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 HPCAL1P37235 193 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 OPRL1P41146 370 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 MAGEA8P43361 318 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 SYKP43405 635 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 GABRA4P48169 554 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ATP5J2P56134 94 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 OC90Q02509 493 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 PLOD1Q02809 727 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 GBE1Q04446 702 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 RIGQ13278 110 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 SNAI3Q3KNW1 292 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ACER2Q5QJU3 275 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 C6orf52Q5T4I8 152 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 GPRC6AQ5T6X5 926 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 LIPNQ5VXI9 398 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 CARD17Q5XLA6 110 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ACSM5Q6NUN0 579 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 NLRP9Q7RTR0 991 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 PAQR7Q86WK9 346 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 CRLF3Q8IUI8 442 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 DHRSXQ8N5I4 330 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 BEST4Q8NFU0 473 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF519Q8TB69 540 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 PIH1D2Q8WWB5 315 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 RNASE6Q93091 150 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 NT5C3BQ969T7 300 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 PRAC1Q96KF2 57 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 CITED1Q99966 193 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 GPR61Q9BZJ8 451 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ROPN1BQ9BZX4 212 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 WDR13Q9H1Z4 485 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 MMP28Q9H239 520 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 RHOJQ9H4E5 214 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 MOB1AQ9H8S9 216 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 IL1RL2Q9HB29 575 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 PDFQ9HBH1 243 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 RAB18Q9NP72 206 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 POLE4Q9NR33 117 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 DEPPQ9NTK1 212 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 TXLNGQ9NUQ3 528 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 IMP3Q9NV31 184 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 DDX18Q9NVP1 670 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 SLC2A8Q9NY64 477 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 WWOXQ9NZC7 414 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 SPATA7Q9P0W8 599 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 ANAPC7Q9UJX3 599 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms