RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TUBA1BP68363 451 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 CRMP1Q14194 572 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 TBRG1Q3YBR2 411 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 KLHL24Q6TFL4 600 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 MEX3BQ6ZN04 569 aaKnown RBP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 TUBA1AQ71U36 451 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 MYPOPQ86VE0 399 aaPredicted RBP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 OR6V1Q8N148 313 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 CYB561A3Q8NBI2 242 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 C1orf162Q8NEQ5 155 aaPredicted RBP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 OR52E2Q8NGJ4 325 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 KISS1RQ969F8 398 aaPredicted RBP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 RFKQ969G6 155 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 MYDGFQ969H8 173 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 FOXN4Q96NZ1 517 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 SPOCK3Q9BQ16 436 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 NUAK2Q9H093 628 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 OR10A4Q9H209 315 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 CCNB1IP1Q9NPC3 277 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 BATF3Q9NR55 127 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 SLC17A5Q9NRA2 495 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 CMC2Q9NRP2 79 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 TMEM38BQ9NVV0 291 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 PSORS1C1Q9UIG5 152 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 KLHL21Q9UJP4 597 aa11.36□□□□□ -0.59
CCDC42-202ENST00000539522 RPL36Q9Y3U8 105 aaKnown RBP11.36□□□□□ -0.59
CCDC42-202ENST00000539522 EFCAB10A6NFE3 127 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 A6NIZ1 184 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 RIIAD1A6NNX1 92 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 DEFB108AA8MXU0 73 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 XPNPEP2O43895 674 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 ENTPD6O75354 484 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 MPZL1O95297 269 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 CLPTM1O96005 669 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 GAAP10253 952 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 B4GALT1P15291 398 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 RAP1BP61224 184 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 RAP1AP62834 184 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 STK11Q15831 433 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 SMN1Q16637 294 aaKnown RBP11.35□□□□□ -0.59
CCDC42-202ENST00000539522 ZNF787Q6DD87 383 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 LEG1Q6P5S2 330 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 LYPD4Q6UWN0 246 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 ZBTB46Q86UZ6 589 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 SKA3Q8IX90 412 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 ZNF540Q8NDQ6 660 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 NSMAFQ92636 917 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 GGHQ92820 318 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 PTP4A1Q93096 173 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 ZNF582Q96NG8 517 aaPredicted RBP11.35□□□□□ -0.59
CCDC42-202ENST00000539522 SNX18Q96RF0 628 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 FOXB1Q99853 325 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 MED20Q9H944 212 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 SEC61A2Q9H9S3 476 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 B3GNT2Q9NY97 397 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 B9D1Q9UPM9 204 aa11.35□□□□□ -0.59
CCDC42-202ENST00000539522 RAI1Q7Z5J4 1906 aaPredicted RBP11.35□□□□□ -0.59
CCDC42-202ENST00000539522 CSMD1Q96PZ7 3565 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 FAM221AA4D161 298 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 FAM183AA6NL82 134 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 TRIM64CA6NLI5 447 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 PATE4P0C8F1 98 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 PRF1P14222 555 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ZNF3P17036 446 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 PAICSP22234 425 aaKnown RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 NR1H2P55055 460 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 SLC35A2P78381 396 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 TMED1Q13445 227 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ENDOGQ14249 297 aaKnown RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 KLHL22Q53GT1 634 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 TIMM23BQ5SRD1 257 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 THEM4Q5T1C6 240 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 LINC01590Q5TEZ4 76 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 AADACL4Q5VUY2 407 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ANKRD16Q6P6B7 361 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ZNF773Q6PK81 442 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ADCK1Q86TW2 530 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 CPOQ8IVL8 374 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 BBS1Q8NFJ9 593 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 STEAP2Q8NFT2 490 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 OR52N5Q8NH56 324 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 ZC3HAV1LQ96H79 300 aaKnown RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 HS3ST6Q96QI5 342 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 SH3GL3Q99963 347 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 HDHD5Q9BXW7 423 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 HINT3Q9NQE9 182 aaKnown RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 FKBP14Q9NWM8 211 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 CNOT2Q9NZN8 540 aaKnown RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 COA3Q9Y2R0 106 aaPredicted RBP11.34□□□□□ -0.59
CCDC42-202ENST00000539522 SNX5Q9Y5X3 404 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 APCP25054 2843 aa11.34□□□□□ -0.59
CCDC42-202ENST00000539522 UNC79Q9P2D8 2635 aa11.33□□□□□ -0.6
CCDC42-202ENST00000539522 ARPC4-TTLL3A0A0A6YYG9 625 aa11.33□□□□□ -0.6
CCDC42-202ENST00000539522 IRGMA1A4Y4 181 aa11.33□□□□□ -0.6
CCDC42-202ENST00000539522 TUBAL3A6NHL2 446 aa11.33□□□□□ -0.6
CCDC42-202ENST00000539522 FAM171A2A8MVW0 826 aa11.33□□□□□ -0.6
CCDC42-202ENST00000539522 PRR23D1E9PI22 279 aaPredicted RBP11.33□□□□□ -0.6
CCDC42-202ENST00000539522 XKRYO14609 159 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms