RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPF3	YGR072W	NRG1	Q03125	231 aa		4.27	□□□□□ -1.73
UPF3	YGR072W	MUS81	Q04149	632 aa	Predicted RBP	4.27	□□□□□ -1.73
UPF3	YGR072W	SSB1	P11484	613 aa	Known RBP	4.26	□□□□□ -1.73
UPF3	YGR072W	CYS3	P31373	394 aa	Known RBP	4.26	□□□□□ -1.73
UPF3	YGR072W	BET3	P36149	193 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	GDH3	P39708	457 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	SSB2	P40150	613 aa	Known RBP	4.26	□□□□□ -1.73
UPF3	YGR072W	DNM1	P54861	757 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	NTG2	Q08214	380 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	SGO1	Q08490	590 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	ENV7	Q12003	364 aa		4.26	□□□□□ -1.73
UPF3	YGR072W	YLR415C	O13578	112 aa		4.25	□□□□□ -1.73
UPF3	YGR072W	LAT1	P12695	482 aa	Known RBP	4.25	□□□□□ -1.73
UPF3	YGR072W	SAK1	P38990	1142 aa		4.25	□□□□□ -1.73
UPF3	YGR072W	UBP6	P43593	499 aa	Known RBP	4.25	□□□□□ -1.73
UPF3	YGR072W	YOR022C	Q12204	715 aa		4.25	□□□□□ -1.73
UPF3	YGR072W	ADR1	P07248	1323 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	GRX4	P32642	244 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	PET10	P36139	283 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	UBP12	P39538	1254 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	FMP52	P40008	231 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	PFA3	P42836	336 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	SSY5	P47002	699 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	HLJ1	P48353	224 aa		4.24	□□□□□ -1.73
UPF3	YGR072W	NOG2	P53742	486 aa	Known RBP	4.24	□□□□□ -1.73
UPF3	YGR072W	MSD1	P15179	658 aa	Known RBP	4.23	□□□□□ -1.73
UPF3	YGR072W	RPL8A	P17076	256 aa	Known RBP	4.23	□□□□□ -1.73
UPF3	YGR072W	HIS7	P33734	552 aa	Known RBP	4.23	□□□□□ -1.73
UPF3	YGR072W	CBR1	P38626	284 aa	Known RBP	4.23	□□□□□ -1.73
UPF3	YGR072W	BCD1	P38772	366 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	DSS1	P39112	969 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	ALG2	P43636	503 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	SSL2	Q00578	843 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	TFB2	Q02939	513 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	ASM4	Q05166	528 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	TGL5	Q12043	749 aa		4.23	□□□□□ -1.73
UPF3	YGR072W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
UPF3	YGR072W	TOP3	P13099	656 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	DAL7	P21826	554 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	DMC1	P25453	334 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	HOS4	P40480	1083 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	PMT3	P47190	753 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	NIT3	P49954	291 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	TEL2	P53038	688 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	YNR029C	P53729	429 aa	Known RBP	4.22	□□□□□ -1.73
UPF3	YGR072W	MDM12	Q92328	271 aa		4.22	□□□□□ -1.73
UPF3	YGR072W	PRC1	P00729	532 aa		4.21	□□□□□ -1.74
UPF3	YGR072W	SIC1	P38634	284 aa		4.21	□□□□□ -1.74
UPF3	YGR072W	YEN1	P40028	759 aa		4.21	□□□□□ -1.74
UPF3	YGR072W	DAM1	P53267	343 aa		4.21	□□□□□ -1.74
UPF3	YGR072W	YNL193W	P53870	558 aa		4.21	□□□□□ -1.74
UPF3	YGR072W	SMX3	P54999	86 aa	Predicted RBP	4.21	□□□□□ -1.74
UPF3	YGR072W	NOP2	P40991	618 aa	Known RBP	4.2	□□□□□ -1.74
UPF3	YGR072W	ZDS1	P50111	915 aa	Known RBP	4.2	□□□□□ -1.74
UPF3	YGR072W	UBC11	P52492	156 aa		4.2	□□□□□ -1.74
UPF3	YGR072W	TAD1	P53065	400 aa		4.2	□□□□□ -1.74
UPF3	YGR072W	RSC3	Q06639	885 aa		4.2	□□□□□ -1.74
UPF3	YGR072W	YCL002C	P25565	263 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	VBA3	P25594	458 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	YJL206C	P39529	758 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	SCS3	P53012	380 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	MAL11	P53048	616 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	LRS4	Q04087	347 aa	Known RBP	4.19	□□□□□ -1.74
UPF3	YGR072W	TAF3	Q12297	353 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	GPR1	Q12361	961 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	ATG11	Q12527	1178 aa		4.19	□□□□□ -1.74
UPF3	YGR072W	MRC1	P25588	1096 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	HIR1	P32479	840 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	SPC29	P33419	253 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	YEL1	P34225	687 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	CCT7	P42943	550 aa	Known RBP	4.18	□□□□□ -1.74
UPF3	YGR072W	YGR237C	P50089	785 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	RTS3	P53289	263 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	SDA1	P53313	767 aa	Known RBP	4.18	□□□□□ -1.74
UPF3	YGR072W	APM1	Q00776	475 aa	Predicted RBP	4.18	□□□□□ -1.74
UPF3	YGR072W	YDR514C	Q04408	483 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	MRI1	Q06489	411 aa	Known RBP	4.18	□□□□□ -1.74
UPF3	YGR072W	THI21	Q08975	551 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	NUP145	P49687	1317 aa		4.18	□□□□□ -1.74
UPF3	YGR072W	SPO11	P23179	398 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	EMP70	P32802	667 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	STO1	P34160	861 aa	Known RBP	4.17	□□□□□ -1.74
UPF3	YGR072W	EMC3	P36039	253 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	SAP190	P36123	1033 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	BAP3	P41815	604 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	YAP1802	P53309	568 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	COG8	Q04632	607 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	THI73	Q07904	523 aa		4.17	□□□□□ -1.74
UPF3	YGR072W	MEF1	P25039	761 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	GRX7	P38068	203 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	PAF1	P38351	445 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	GAT1	P43574	510 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	YJR008W	P47085	338 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	YGR283C	P53336	341 aa	Predicted RBP	4.16	□□□□□ -1.74
UPF3	YGR072W	UME1	Q03010	460 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	ATP25	Q03153	612 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	REH1	Q06709	432 aa		4.16	□□□□□ -1.74
UPF3	YGR072W	CDC9	P04819	755 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	SRD1	P09007	221 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	YBR259W	P38338	688 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms