RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DBNDD2Q9BQY9 259 aa22.52■■□□□ 1.2
CLN3-254ENST00000637050 MROH5Q6ZUA9 1318 aa22.52■■□□□ 1.2
CLN3-254ENST00000637050 COL4A1P02462 1669 aa22.52■■□□□ 1.2
CLN3-254ENST00000637050 A0A1B0GUL7 405 aa22.52■■□□□ 1.2
CLN3-254ENST00000637050 TIMM10P62072 90 aa22.51■■□□□ 1.19
CLN3-254ENST00000637050 TRIM6-TRIM34B2RNG4 842 aa22.5■■□□□ 1.19
CLN3-254ENST00000637050 ATP5JP18859 108 aa22.5■■□□□ 1.19
CLN3-254ENST00000637050 ST5P78524 1137 aa22.5■■□□□ 1.19
CLN3-254ENST00000637050 NEUROD6Q96NK8 337 aa22.5■■□□□ 1.19
CLN3-254ENST00000637050 NRXN2Q9P2S2 1712 aa22.49■■□□□ 1.19
CLN3-254ENST00000637050 PDE8BO95263 885 aa22.49■■□□□ 1.19
CLN3-254ENST00000637050 ANKRD18AQ8IVF6 992 aa22.49■■□□□ 1.19
CLN3-254ENST00000637050 SPEF2Q9C093 1822 aa22.49■■□□□ 1.19
CLN3-254ENST00000637050 RILPL2Q969X0 211 aa22.49■■□□□ 1.19
CLN3-254ENST00000637050 BSDC1Q9NW68 430 aaPredicted RBP22.48■■□□□ 1.19
CLN3-254ENST00000637050 ATP2B3Q16720 1220 aa22.47■■□□□ 1.19
CLN3-254ENST00000637050 CNTROBQ8N137 903 aa22.47■■□□□ 1.19
CLN3-254ENST00000637050 CELF1Q92879 486 aaKnown RBP22.47■■□□□ 1.19
CLN3-254ENST00000637050 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
CLN3-254ENST00000637050 CRY2Q49AN0 593 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 CASC1Q6TDU7 716 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 TAF1P21675 1872 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 FGFR2P21802 821 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 RPS8P62241 208 aaKnown RBP22.46■■□□□ 1.19
CLN3-254ENST00000637050 DDX46Q7L014 1031 aaKnown RBP22.46■■□□□ 1.19
CLN3-254ENST00000637050 XAGE2Q96GT9 111 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 BOLA2Q9H3K6 86 aa22.46■■□□□ 1.19
CLN3-254ENST00000637050 MMP10P09238 476 aa22.45■■□□□ 1.18
CLN3-254ENST00000637050 PUM3Q15397 648 aaKnown RBP22.45■■□□□ 1.18
CLN3-254ENST00000637050 AK9Q5TCS8 1911 aa22.44■■□□□ 1.18
CLN3-254ENST00000637050 KLRG2A4D1S0 409 aaPredicted RBP22.44■■□□□ 1.18
CLN3-254ENST00000637050 EIF5BO60841 1220 aaKnown RBP22.44■■□□□ 1.18
CLN3-254ENST00000637050 ADORA1P30542 326 aa22.44■■□□□ 1.18
CLN3-254ENST00000637050 MFAP1P55081 439 aaKnown RBP22.44■■□□□ 1.18
CLN3-254ENST00000637050 CHRNDQ07001 517 aa22.44■■□□□ 1.18
CLN3-254ENST00000637050 HELBQ8NG08 1087 aaPredicted RBP22.44■■□□□ 1.18
CLN3-254ENST00000637050 EVI5LQ96CN4 794 aa22.44■■□□□ 1.18
CLN3-254ENST00000637050 UPF2Q9HAU5 1272 aaKnown RBP22.44■■□□□ 1.18
CLN3-254ENST00000637050 CHMLP26374 656 aa22.43■■□□□ 1.18
CLN3-254ENST00000637050 MSL1Q68DK7 614 aa22.43■■□□□ 1.18
CLN3-254ENST00000637050 LPIN2Q92539 896 aa22.43■■□□□ 1.18
CLN3-254ENST00000637050 PARP3Q9Y6F1 533 aa22.43■■□□□ 1.18
CLN3-254ENST00000637050 ARAP2Q8WZ64 1704 aa22.43■■□□□ 1.18
CLN3-254ENST00000637050 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.42■■□□□ 1.18
CLN3-254ENST00000637050 HAUS7Q99871 368 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 A0A1B0GUL6 1792 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 TAF5LO75529 589 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 CCDC158Q5M9N0 1113 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 BRIP1Q9BX63 1249 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 MINPP1Q9UNW1 487 aa22.42■■□□□ 1.18
CLN3-254ENST00000637050 GRAPQ13588 217 aa22.41■■□□□ 1.18
CLN3-254ENST00000637050 GORABQ5T7V8 394 aa22.41■■□□□ 1.18
CLN3-254ENST00000637050 GRAPLQ8TC17 118 aaPredicted RBP22.41■■□□□ 1.18
CLN3-254ENST00000637050 RPGRQ92834 1020 aaKnown RBP22.41■■□□□ 1.18
CLN3-254ENST00000637050 ANKRD31Q8N7Z5 1873 aa22.41■■□□□ 1.18
CLN3-254ENST00000637050 SLC5A1P13866 664 aa22.39■■□□□ 1.18
CLN3-254ENST00000637050 HOXA10P31260 410 aaPredicted RBP22.39■■□□□ 1.18
CLN3-254ENST00000637050 TBC1D32Q96NH3 1257 aa22.39■■□□□ 1.18
CLN3-254ENST00000637050 IFIT1P09914 478 aaKnown RBP22.39■■□□□ 1.17
CLN3-254ENST00000637050 TTC39AQ5SRH9 613 aa22.39■■□□□ 1.17
CLN3-254ENST00000637050 RBM17Q96I25 401 aaKnown RBP22.39■■□□□ 1.17
CLN3-254ENST00000637050 ZNF512BQ96KM6 892 aaPredicted RBP22.39■■□□□ 1.17
CLN3-254ENST00000637050 ESYT1Q9BSJ8 1104 aa22.39■■□□□ 1.17
CLN3-254ENST00000637050 SNAP23O00161 211 aa22.37■■□□□ 1.17
CLN3-254ENST00000637050 UBE4AQ14139 1066 aa22.37■■□□□ 1.17
CLN3-254ENST00000637050 DNAJC2Q99543 621 aaKnown RBP22.37■■□□□ 1.17
CLN3-254ENST00000637050 EDC3Q96F86 508 aaKnown RBP22.36■■□□□ 1.17
CLN3-254ENST00000637050 CRAMP1Q96RY5 1269 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 C22orf23Q9BZE7 217 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 PDGFDQ9GZP0 370 aaPredicted RBP22.36■■□□□ 1.17
CLN3-254ENST00000637050 ANKRD2Q9GZV1 360 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 NDUFB9Q9Y6M9 179 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 CCDC102BQ68D86 513 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 SLC16A10Q8TF71 515 aa22.36■■□□□ 1.17
CLN3-254ENST00000637050 RFX7Q2KHR2 1363 aa22.35■■□□□ 1.17
CLN3-254ENST00000637050 HIP1O00291 1037 aa22.35■■□□□ 1.17
CLN3-254ENST00000637050 ARID4AP29374 1257 aaPredicted RBP22.35■■□□□ 1.17
CLN3-254ENST00000637050 PDE6BP35913 854 aa22.35■■□□□ 1.17
CLN3-254ENST00000637050 FSD1Q9BTV5 496 aa22.35■■□□□ 1.17
CLN3-254ENST00000637050 PAG1Q9NWQ8 432 aa22.35■■□□□ 1.17
CLN3-254ENST00000637050 REC8O95072 547 aa22.34■■□□□ 1.17
CLN3-254ENST00000637050 UQCRFS1P1P0C7P4 283 aa22.34■■□□□ 1.17
CLN3-254ENST00000637050 ANP32AP39687 249 aaKnown RBP22.34■■□□□ 1.17
CLN3-254ENST00000637050 PHKA1P46020 1223 aa22.34■■□□□ 1.17
CLN3-254ENST00000637050 TICAM2Q86XR7 235 aa22.34■■□□□ 1.17
CLN3-254ENST00000637050 DIAPH3Q9NSV4 1193 aa22.34■■□□□ 1.17
CLN3-254ENST00000637050 SRGNP10124 158 aa22.33■■□□□ 1.17
CLN3-254ENST00000637050 RBM25P49756 843 aaKnown RBP22.33■■□□□ 1.17
CLN3-254ENST00000637050 SCARF1Q14162 830 aa22.33■■□□□ 1.17
CLN3-254ENST00000637050 KBTBD3Q8NAB2 608 aa22.33■■□□□ 1.17
CLN3-254ENST00000637050 UPF1Q92900 1129 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLN3-254ENST00000637050 GOLIM4O00461 696 aa22.33■■□□□ 1.16
CLN3-254ENST00000637050 BBOX1O75936 387 aa22.33■■□□□ 1.16
CLN3-254ENST00000637050 USP26Q9BXU7 913 aa22.33■■□□□ 1.16
CLN3-254ENST00000637050 SGSM2O43147 1006 aa22.32■■□□□ 1.16
CLN3-254ENST00000637050 MCAMP43121 646 aa22.32■■□□□ 1.16
CLN3-254ENST00000637050 RUFY2Q8WXA3 655 aa22.32■■□□□ 1.16
CLN3-254ENST00000637050 IL25Q9H293 177 aa22.32■■□□□ 1.16
CLN3-254ENST00000637050 AKAP11Q9UKA4 1901 aa22.31■■□□□ 1.16
CLN3-254ENST00000637050 WTIPA6NIX2 430 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms