RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 XRN1Q8IZH2 1706 aaKnown RBP17.94■□□□□ 0.46
UPF1-204ENST00000596842 BIN1O00499 593 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 ZNF75DP51815 510 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 SMAP1Q8IYB5 467 aaPredicted RBP17.94■□□□□ 0.46
UPF1-204ENST00000596842 ZNF496Q96IT1 587 aaPredicted RBP17.94■□□□□ 0.46
UPF1-204ENST00000596842 RGPD1P0DJD0 1748 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 ZNF790Q6PG37 636 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 DDX17Q92841 729 aaKnown RBP17.93■□□□□ 0.46
UPF1-204ENST00000596842 IL17RAQ96F46 866 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 CLSTN2Q9H4D0 955 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 KINO60870 393 aaKnown RBP17.93■□□□□ 0.46
UPF1-204ENST00000596842 POLR3DP05423 398 aaPredicted RBP17.93■□□□□ 0.46
UPF1-204ENST00000596842 TPM3P06753 285 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 TNNI3KQ59H18 835 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 LMBR1LQ6UX01 489 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 CACTINQ8WUQ7 758 aaKnown RBP17.93■□□□□ 0.46
UPF1-204ENST00000596842 SPTLC3Q9NUV7 552 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 FPGT-TNNI3KV9GXZ4 949 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 DIP2AQ14689 1571 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 FKBP4Q02790 459 aaKnown RBP eCLIP17.93■□□□□ 0.46
UPF1-204ENST00000596842 SCRN1Q12765 414 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 CCDC144BQ3MJ40 725 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 ZSCAN25Q6NSZ9 544 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 C11orf57Q6ZUT1 292 aaPredicted RBP17.93■□□□□ 0.46
UPF1-204ENST00000596842 CCDC144CPQ8IYA2 1237 aa17.93■□□□□ 0.46
UPF1-204ENST00000596842 USP42Q9H9J4 1324 aaKnown RBP17.92■□□□□ 0.46
UPF1-204ENST00000596842 CABLES1Q8TDN4 633 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 GTF3C6Q969F1 213 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 GTF2E1P29083 439 aaPredicted RBP17.92■□□□□ 0.46
UPF1-204ENST00000596842 CHRNA2Q15822 529 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 FAM208AQ9UK61 1670 aaKnown RBP17.92■□□□□ 0.46
UPF1-204ENST00000596842 GORABQ5T7V8 394 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 CCDC112Q8NEF3 446 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 PXDNLA1KZ92 1463 aa17.92■□□□□ 0.46
UPF1-204ENST00000596842 WASHC4Q2M389 1173 aa17.91■□□□□ 0.46
UPF1-204ENST00000596842 ZNF594Q96JF6 807 aaPredicted RBP17.91■□□□□ 0.46
UPF1-204ENST00000596842 CFAP45Q9UL16 551 aa17.91■□□□□ 0.46
UPF1-204ENST00000596842 PTPDC1A2A3K4 754 aa17.91■□□□□ 0.46
UPF1-204ENST00000596842 FSIP1Q8NA03 581 aa17.91■□□□□ 0.46
UPF1-204ENST00000596842 KRT32Q14532 448 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 STK11IPQ8N1F8 1099 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 GPHNQ9NQX3 736 aaPredicted RBP17.9■□□□□ 0.46
UPF1-204ENST00000596842 MCMDC2Q4G0Z9 681 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 TTLL5Q6EMB2 1281 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 USP28Q96RU2 1077 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 HMG20BQ9P0W2 317 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 PIK3C2AO00443 1686 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 ZBTB9Q96C00 473 aa17.9■□□□□ 0.46
UPF1-204ENST00000596842 A0A1B0GVL5 298 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 APPP05067 770 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 PXDNQ92626 1479 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 AOPEPQ8N6M6 819 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 GJB4Q9NTQ9 266 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 FMN2Q9NZ56 1722 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 SMC2O95347 1197 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 ZBTB3Q9H5J0 574 aa17.89■□□□□ 0.45
UPF1-204ENST00000596842 USP27XA6NNY8 438 aa17.88■□□□□ 0.45
UPF1-204ENST00000596842 STOX1Q6ZVD7 989 aa17.88■□□□□ 0.45
UPF1-204ENST00000596842 PTPN12Q05209 780 aaKnown RBP17.88■□□□□ 0.45
UPF1-204ENST00000596842 PDIA6Q15084 440 aa17.88■□□□□ 0.45
UPF1-204ENST00000596842 U3KPZ7 1027 aaPredicted RBP17.88■□□□□ 0.45
UPF1-204ENST00000596842 SKILP12757 684 aa17.88■□□□□ 0.45
UPF1-204ENST00000596842 RESTQ13127 1097 aa17.88■□□□□ 0.45
UPF1-204ENST00000596842 ZFP91Q96JP5 570 aaPredicted RBP17.87■□□□□ 0.45
UPF1-204ENST00000596842 METTL22Q9BUU2 404 aaPredicted RBP17.87■□□□□ 0.45
UPF1-204ENST00000596842 ELP1O95163 1332 aa17.87■□□□□ 0.45
UPF1-204ENST00000596842 GOLPH3LQ9H4A5 285 aa17.87■□□□□ 0.45
UPF1-204ENST00000596842 ARHGEF25Q86VW2 580 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 COL15A1P39059 1388 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 UBR1Q8IWV7 1749 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 TRHP20396 242 aaPredicted RBP17.86■□□□□ 0.45
UPF1-204ENST00000596842 PTPN21Q16825 1174 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 CEP135Q66GS9 1140 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 KCNB2Q92953 911 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 STK38Q15208 465 aa17.86■□□□□ 0.45
UPF1-204ENST00000596842 TATP17735 454 aaPredicted RBP17.85■□□□□ 0.45
UPF1-204ENST00000596842 ATP5JP18859 108 aa17.85■□□□□ 0.45
UPF1-204ENST00000596842 NPHP4O75161 1426 aaPredicted RBP17.85■□□□□ 0.45
UPF1-204ENST00000596842 NWD1Q149M9 1564 aa17.85■□□□□ 0.45
UPF1-204ENST00000596842 CCDC69A6NI79 296 aa17.85■□□□□ 0.45
UPF1-204ENST00000596842 KRT28Q7Z3Y7 464 aa17.85■□□□□ 0.45
UPF1-204ENST00000596842 CPLX1O14810 134 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 IFIT1P09914 478 aaKnown RBP17.84■□□□□ 0.45
UPF1-204ENST00000596842 PTPN14Q15678 1187 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 HSP90AA4PQ58FG1 418 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 DHX32Q7L7V1 743 aaKnown RBP17.84■□□□□ 0.45
UPF1-204ENST00000596842 ANKLE2Q86XL3 938 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 PAG1Q9NWQ8 432 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 NALCNQ8IZF0 1738 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 MED23Q9ULK4 1368 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 RXRAP19793 462 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 STX1AQ16623 288 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 CABP4P57796 275 aa17.84■□□□□ 0.45
UPF1-204ENST00000596842 NSUN7Q8NE18 718 aaKnown RBP17.84■□□□□ 0.45
UPF1-204ENST00000596842 TDRD7Q8NHU6 1098 aaKnown RBP17.84■□□□□ 0.45
UPF1-204ENST00000596842 ZSCAN16Q9H4T2 348 aaPredicted RBP17.84■□□□□ 0.45
UPF1-204ENST00000596842 NCBP1Q09161 790 aaKnown RBP17.83■□□□□ 0.45
UPF1-204ENST00000596842 SLC52A2Q9HAB3 445 aa17.83■□□□□ 0.45
UPF1-204ENST00000596842 ZNF609O15014 1411 aa17.83■□□□□ 0.45
UPF1-204ENST00000596842 GNL2Q13823 731 aaKnown RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms