RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 NR1I2O75469 434 aa15.98■□□□□ 0.15
CLK3-215ENST00000564353 TPM2P07951 284 aa15.98■□□□□ 0.15
CLK3-215ENST00000564353 PRDM4Q9UKN5 801 aa15.98■□□□□ 0.15
CLK3-215ENST00000564353 SCRN1Q12765 414 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 SYNE4Q8N205 404 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 FUCA2Q9BTY2 467 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 NUP62CLQ9H1M0 184 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 MCMDC2Q4G0Z9 681 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 PI16Q6UXB8 463 aa15.97■□□□□ 0.15
CLK3-215ENST00000564353 FOXO4P98177 505 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 TAF7LQ5H9L4 462 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 BBXQ8WY36 941 aaPredicted RBP15.96■□□□□ 0.15
CLK3-215ENST00000564353 TNMDQ9H2S6 317 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 MST1RQ04912 1400 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 FAM184AQ8NB25 1140 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 C5P01031 1676 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 SLIT3O75094 1523 aa15.96■□□□□ 0.15
CLK3-215ENST00000564353 ANO6Q4KMQ2 910 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 OTUD7BQ6GQQ9 843 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 ATG9AQ7Z3C6 839 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 LEO1Q8WVC0 666 aaPredicted RBP15.95■□□□□ 0.14
CLK3-215ENST00000564353 PGBD1Q96JS3 809 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 PRDM11Q9NQV5 511 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 STRCP1A6NGW2 1772 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 PLBD2Q8NHP8 589 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 GTF3C6Q969F1 213 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 HAUS7Q99871 368 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 PAG1Q9NWQ8 432 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 CCDC192P0DO97 292 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 CASP7P55210 303 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 TYRO3Q06418 890 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 ANKRD1Q15327 319 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 MAP3K11Q16584 847 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 CSPP1Q1MSJ5 1256 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 PYCARDQ9ULZ3 195 aa15.95■□□□□ 0.14
CLK3-215ENST00000564353 ADORA1P30542 326 aa15.94■□□□□ 0.14
CLK3-215ENST00000564353 MRVI1Q9Y6F6 885 aa15.94■□□□□ 0.14
CLK3-215ENST00000564353 NOLC1Q14978 699 aaKnown RBP eCLIP15.94■□□□□ 0.14
CLK3-215ENST00000564353 RABL6Q3YEC7 729 aaPredicted RBP15.94■□□□□ 0.14
CLK3-215ENST00000564353 FAM89AQ96GI7 184 aa15.94■□□□□ 0.14
CLK3-215ENST00000564353 A0A1B0GUL7 405 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 LETM1O95202 739 aaPredicted RBP15.93■□□□□ 0.14
CLK3-215ENST00000564353 IFIT1P09914 478 aaKnown RBP15.93■□□□□ 0.14
CLK3-215ENST00000564353 PDCP20941 246 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 DRC7Q8IY82 874 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 DNAJC25Q9H1X3 360 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 GJB4Q9NTQ9 266 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 CWC25Q9NXE8 425 aaPredicted RBP15.93■□□□□ 0.14
CLK3-215ENST00000564353 NRBP1Q9UHY1 535 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 WASHC4Q2M389 1173 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 KBTBD3Q8NAB2 608 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 KCNF1Q9H3M0 494 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 CRYBG1Q9Y4K1 1723 aa15.93■□□□□ 0.14
CLK3-215ENST00000564353 A0A0G2JS52 829 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 GORABQ5T7V8 394 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 CADPS2Q86UW7 1296 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 HMG20BQ9P0W2 317 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 TRPM3Q9HCF6 1732 aaPredicted RBP15.92■□□□□ 0.14
CLK3-215ENST00000564353 M0R2C6 588 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 PTGS1P23219 599 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 GPTP24298 496 aa15.92■□□□□ 0.14
CLK3-215ENST00000564353 LRMPQ12912 555 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 UVSSAQ2YD98 709 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 U3KPZ7 1027 aaPredicted RBP15.91■□□□□ 0.14
CLK3-215ENST00000564353 PTPDC1A2A3K4 754 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 SCARF1Q14162 830 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 USPL1Q5W0Q7 1092 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 ZCRB1Q8TBF4 217 aaKnown RBP15.91■□□□□ 0.14
CLK3-215ENST00000564353 CBX8Q9HC52 389 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 OVOS2A0A0G2JMS6 1433 aa15.91■□□□□ 0.14
CLK3-215ENST00000564353 CTDNEP1O95476 244 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 HSPD1P10809 573 aaKnown RBP15.9■□□□□ 0.14
CLK3-215ENST00000564353 KDM4FA0A1W2PPD8 638 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 DENND2AQ9ULE3 1009 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 MAST3O60307 1309 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 E7EWF7 191 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 H7C1W4 665 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 MCM5P33992 734 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 RESTQ13127 1097 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 KRT32Q14532 448 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 BRINP3Q76B58 766 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 OSBP2Q969R2 916 aa15.9■□□□□ 0.14
CLK3-215ENST00000564353 SCAND2PQ9GZW5 306 aaPredicted RBP15.9■□□□□ 0.14
CLK3-215ENST00000564353 ZNF335Q9H4Z2 1342 aaPredicted RBP15.9■□□□□ 0.14
CLK3-215ENST00000564353 PIBF1Q8WXW3 757 aa15.89■□□□□ 0.13
CLK3-215ENST00000564353 NSUN7Q8NE18 718 aaKnown RBP15.89■□□□□ 0.13
CLK3-215ENST00000564353 TRIM5Q9C035 493 aa15.89■□□□□ 0.13
CLK3-215ENST00000564353 SASS6Q6UVJ0 657 aa15.88■□□□□ 0.13
CLK3-215ENST00000564353 DHX32Q7L7V1 743 aaKnown RBP15.88■□□□□ 0.13
CLK3-215ENST00000564353 FAM200AQ8TCP9 573 aa15.88■□□□□ 0.13
CLK3-215ENST00000564353 EYA2O00167 538 aa15.88■□□□□ 0.13
CLK3-215ENST00000564353 POLR3DP05423 398 aaPredicted RBP15.88■□□□□ 0.13
CLK3-215ENST00000564353 CCDC186Q7Z3E2 898 aa15.88■□□□□ 0.13
CLK3-215ENST00000564353 USP28Q96RU2 1077 aa15.88■□□□□ 0.13
CLK3-215ENST00000564353 SPATA31A3Q5VYP0 1347 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 RXRAP19793 462 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 GOLPH3LQ9H4A5 285 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLK3-215ENST00000564353 ASAP1Q9ULH1 1129 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 CCDC57Q2TAC2 916 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms