RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 TTLL7Q6ZT98 887 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 NGEFQ8N5V2 710 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 TRPM7Q96QT4 1865 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 BABAM1Q9NWV8 329 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 TSPYL4Q9UJ04 414 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 ABT1Q9ULW3 272 aaKnown RBP10.03□□□□□ -0.8
NEK3-201ENST00000550331 RRP7AQ9Y3A4 280 aaKnown RBP10.03□□□□□ -0.8
NEK3-201ENST00000550331 UBN2Q6ZU65 1347 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 ZNF541Q9H0D2 1346 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 FZD9O00144 591 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 MYL6BP14649 208 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 HOXA10P31260 410 aaPredicted RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 EPHX2P34913 555 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 IARSP41252 1262 aaKnown RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 LMOD3Q0VAK6 560 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 MAP1SQ66K74 1059 aaPredicted RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 OLFM4Q6UX06 510 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 NYAP1Q6ZVC0 841 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 NUTM1Q86Y26 1132 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 ZNF34Q8IZ26 560 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 CNTROBQ8N137 903 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 RPGRQ92834 1020 aaKnown RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 ZNF775Q96BV0 537 aaPredicted RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 PSMD1Q99460 953 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 ZBTB3Q9H5J0 574 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 ZNF277Q9NRM2 450 aaPredicted RBP10.02□□□□□ -0.81
NEK3-201ENST00000550331 THSD7BQ9C0I4 1608 aa10.02□□□□□ -0.81
NEK3-201ENST00000550331 PTPREP23469 700 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 GPTP24298 496 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 KCNC4Q03721 635 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 GIGYF2Q6Y7W6 1299 aaKnown RBP10.01□□□□□ -0.81
NEK3-201ENST00000550331 PAXIP1Q6ZW49 1069 aaPredicted RBP10.01□□□□□ -0.81
NEK3-201ENST00000550331 PNMA8AQ86V59 439 aaPredicted RBP10.01□□□□□ -0.81
NEK3-201ENST00000550331 BEGAINQ9BUH8 593 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 TAOK2Q9UL54 1235 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 PDE4DIPQ5VU43 2346 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 RNF123Q5XPI4 1314 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 CASP8AP2Q9UKL3 1982 aa10.01□□□□□ -0.81
NEK3-201ENST00000550331 NTSR2O95665 410 aa10□□□□□ -0.81
NEK3-201ENST00000550331 RGS19P49795 217 aa10□□□□□ -0.81
NEK3-201ENST00000550331 RIPK4P57078 832 aa10□□□□□ -0.81
NEK3-201ENST00000550331 GRM1Q13255 1194 aa10□□□□□ -0.81
NEK3-201ENST00000550331 PARP10Q53GL7 1025 aa10□□□□□ -0.81
NEK3-201ENST00000550331 SUSD4Q5VX71 490 aa10□□□□□ -0.81
NEK3-201ENST00000550331 LRP10Q7Z4F1 713 aa10□□□□□ -0.81
NEK3-201ENST00000550331 PPP1R42Q7Z4L9 355 aa10□□□□□ -0.81
NEK3-201ENST00000550331 GPC2Q8N158 579 aa10□□□□□ -0.81
NEK3-201ENST00000550331 SYNE4Q8N205 404 aa10□□□□□ -0.81
NEK3-201ENST00000550331 JDP2Q8WYK2 163 aa10□□□□□ -0.81
NEK3-201ENST00000550331 CFAP44Q96MT7 982 aa10□□□□□ -0.81
NEK3-201ENST00000550331 CRAMP1Q96RY5 1269 aa10□□□□□ -0.81
NEK3-201ENST00000550331 PPEF1O14829 653 aaPredicted RBP9.99□□□□□ -0.81
NEK3-201ENST00000550331 TMPOP42166 694 aaKnown RBP9.99□□□□□ -0.81
NEK3-201ENST00000550331 FOXK1P85037 733 aa9.99□□□□□ -0.81
NEK3-201ENST00000550331 PDIA6Q15084 440 aa9.99□□□□□ -0.81
NEK3-201ENST00000550331 RBM17Q96I25 401 aaKnown RBP9.99□□□□□ -0.81
NEK3-201ENST00000550331 CAPNS2Q96L46 248 aa9.99□□□□□ -0.81
NEK3-201ENST00000550331 MYBBP1AQ9BQG0 1328 aaKnown RBP9.99□□□□□ -0.81
NEK3-201ENST00000550331 DLG5Q8TDM6 1919 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 ECE1P42892 770 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 HSP90AB3PQ58FF7 597 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 SLC10A5Q5PT55 438 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 ZNF454Q8N9F8 522 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 ANKK1Q8NFD2 765 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 NLRP3Q96P20 1036 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 GPR101Q96P66 508 aaPredicted RBP9.98□□□□□ -0.81
NEK3-201ENST00000550331 UTP14AQ9BVJ6 771 aaKnown RBP9.98□□□□□ -0.81
NEK3-201ENST00000550331 DDX21Q9NR30 783 aaKnown RBP eCLIP9.98□□□□□ -0.81
NEK3-201ENST00000550331 TSKSQ9UJT2 592 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 STK24Q9Y6E0 443 aa9.98□□□□□ -0.81
NEK3-201ENST00000550331 LTBP1Q14766 1721 aa9.97□□□□□ -0.81
NEK3-201ENST00000550331 EIF2S2P20042 333 aaKnown RBP9.97□□□□□ -0.81
NEK3-201ENST00000550331 EIF6P56537 245 aaKnown RBP9.97□□□□□ -0.81
NEK3-201ENST00000550331 FMR1Q06787 632 aaKnown RBP eCLIP9.97□□□□□ -0.81
NEK3-201ENST00000550331 PROSER3Q2NL68 480 aa9.97□□□□□ -0.81
NEK3-201ENST00000550331 CYP4F22Q6NT55 531 aa9.97□□□□□ -0.81
NEK3-201ENST00000550331 PLPP6Q8IY26 295 aa9.97□□□□□ -0.81
NEK3-201ENST00000550331 TMX4Q9H1E5 349 aaPredicted RBP9.97□□□□□ -0.81
NEK3-201ENST00000550331 VPS33BQ9H267 617 aa9.97□□□□□ -0.81
NEK3-201ENST00000550331 COL4A5P29400 1685 aa9.96□□□□□ -0.81
NEK3-201ENST00000550331 LMOD1P29536 600 aaPredicted RBP9.96□□□□□ -0.82
NEK3-201ENST00000550331 COPS6Q7L5N1 327 aa9.96□□□□□ -0.82
NEK3-201ENST00000550331 LARGE2Q8N3Y3 721 aa9.96□□□□□ -0.82
NEK3-201ENST00000550331 ATP6V0A2Q9Y487 856 aa9.96□□□□□ -0.82
NEK3-201ENST00000550331 GJA3Q9Y6H8 435 aa9.96□□□□□ -0.82
NEK3-201ENST00000550331 CHL1O00533 1208 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 AOC2O75106 756 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 ANXA1P04083 346 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 HOXB7P09629 217 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 SCNN1DP51172 638 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 TCIRG1Q13488 830 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 NLRP10Q86W26 655 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 NIM1KQ8IY84 436 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 SUPT20HQ8NEM7 779 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 XAGE3Q8WTP9 111 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 RUNDC1Q96C34 613 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 MCOLN1Q9GZU1 580 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 NUP98P52948 1817 aa9.95□□□□□ -0.82
NEK3-201ENST00000550331 TNRC18O15417 2968 aaPredicted RBP9.95□□□□□ -0.82
NEK3-201ENST00000550331 ABCC4O15439 1325 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms