RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PACS2Q86VP3 889 aa9□□□□□ -0.97
LIMA1-204ENST00000549064 NFATC2IPQ8NCF5 419 aa9□□□□□ -0.97
LIMA1-204ENST00000549064 TAOK3Q9H2K8 898 aa9□□□□□ -0.97
LIMA1-204ENST00000549064 NARFQ9UHQ1 456 aa9□□□□□ -0.97
LIMA1-204ENST00000549064 COL15A1P39059 1388 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 IQCA1LA6NCM1 817 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 HSP90AB1P08238 724 aaKnown RBP8.99□□□□□ -0.97
LIMA1-204ENST00000549064 GUCA2AQ02747 115 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 GRM1Q13255 1194 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 PROX2Q3B8N5 592 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 CARD14Q9BXL6 1004 aa8.99□□□□□ -0.97
LIMA1-204ENST00000549064 ABT1Q9ULW3 272 aaKnown RBP8.99□□□□□ -0.97
LIMA1-204ENST00000549064 FDX1P10109 184 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 FMR1Q06787 632 aaKnown RBP eCLIP8.98□□□□□ -0.97
LIMA1-204ENST00000549064 PRPF38BQ5VTL8 546 aaKnown RBP8.98□□□□□ -0.97
LIMA1-204ENST00000549064 HLA-CQ95604 372 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 MCOLN1Q9GZU1 580 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 ZBTB3Q9H5J0 574 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 ZBTB1Q9Y2K1 713 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 ZNF541Q9H0D2 1346 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 LTBP3Q9NS15 1303 aa8.98□□□□□ -0.97
LIMA1-204ENST00000549064 HOXA2O43364 376 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 EPHX2P34913 555 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 MTHFSP49914 203 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 PLEKHO1Q53GL0 409 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-204ENST00000549064 CYP4F22Q6NT55 531 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 CNTROBQ8N137 903 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 ADAMTS19Q8TE59 1207 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 CAPNS2Q96L46 248 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 HMX1Q9NP08 348 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-204ENST00000549064 POLKQ9UBT6 870 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 PCDHGC3Q9UN70 934 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 NDUFB9Q9Y6M9 179 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 TRPM7Q96QT4 1865 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 SCN7AQ01118 1682 aa8.97□□□□□ -0.97
LIMA1-204ENST00000549064 CYP19A1P11511 503 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-204ENST00000549064 GCGRP47871 477 aa8.96□□□□□ -0.98
LIMA1-204ENST00000549064 HDGFL1Q5TGJ6 251 aa8.96□□□□□ -0.98
LIMA1-204ENST00000549064 HACL1Q9UJ83 578 aa8.96□□□□□ -0.98
LIMA1-204ENST00000549064 RNF123Q5XPI4 1314 aa8.96□□□□□ -0.98
LIMA1-204ENST00000549064 AOC2O75106 756 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 RFX1P22670 979 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 TNNT2P45379 298 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-204ENST00000549064 USP46P62068 366 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 CTDSPL2Q05D32 466 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 SLC39A6Q13433 755 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 TBC1D9BQ66K14 1250 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 PRR5LQ6MZQ0 368 aa8.95□□□□□ -0.98
LIMA1-204ENST00000549064 PRPF40BQ6NWY9 871 aaKnown RBP8.95□□□□□ -0.98
LIMA1-204ENST00000549064 GPR101Q96P66 508 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-204ENST00000549064 CANXP27824 592 aaKnown RBP8.94□□□□□ -0.98
LIMA1-204ENST00000549064 PDE6BP35913 854 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 DGKZQ13574 1117 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 C1orf141Q5JVX7 400 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 TSC1Q92574 1164 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 KCNK17Q96T54 332 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 BRIP1Q9BX63 1249 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 TRIM34Q9BYJ4 488 aa8.94□□□□□ -0.98
LIMA1-204ENST00000549064 DDX21Q9NR30 783 aaKnown RBP eCLIP8.94□□□□□ -0.98
LIMA1-204ENST00000549064 ZNF277Q9NRM2 450 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-204ENST00000549064 GPR37L1O60883 481 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 SLC10A3P09131 477 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 SOX10P56693 466 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 AMOTQ4VCS5 1084 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 OLFM4Q6UX06 510 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 CNKSR1Q969H4 720 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 GZF1Q9H116 711 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-204ENST00000549064 UBR2Q8IWV8 1755 aa8.93□□□□□ -0.98
LIMA1-204ENST00000549064 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-204ENST00000549064 TRAF5O00463 557 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 SRGNP10124 158 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 ECE1P42892 770 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 VAC14Q08AM6 782 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 SWT1Q5T5J6 900 aaKnown RBP8.92□□□□□ -0.98
LIMA1-204ENST00000549064 CST9Q5W186 159 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 STYK1Q6J9G0 422 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 PNMA8AQ86V59 439 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-204ENST00000549064 LRRN4Q8WUT4 740 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 PBXIP1Q96AQ6 731 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 LGR6Q9HBX8 967 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 KIAA1468Q9P260 1216 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 PDZRN3Q9UPQ7 1066 aa8.92□□□□□ -0.98
LIMA1-204ENST00000549064 MRC1P22897 1456 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 EIF5P55010 431 aaKnown RBP8.91□□□□□ -0.98
LIMA1-204ENST00000549064 WASHC4Q2M389 1173 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 CCDC93Q567U6 631 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 SOGA3Q5TF21 947 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 C7orf43Q8WVR3 580 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 MASTLQ96GX5 879 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 SLC52A2Q9HAB3 445 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 TLL2Q9Y6L7 1015 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 BCORQ6W2J9 1755 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 COL4A5P29400 1685 aa8.91□□□□□ -0.98
LIMA1-204ENST00000549064 POTEB2H3BUK9 544 aa8.9□□□□□ -0.98
LIMA1-204ENST00000549064 FKBP4Q02790 459 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMA1-204ENST00000549064 MTMR2Q13614 643 aa8.9□□□□□ -0.98
LIMA1-204ENST00000549064 TMCO4Q5TGY1 634 aa8.9□□□□□ -0.98
LIMA1-204ENST00000549064 CNBD1Q8NA66 436 aa8.9□□□□□ -0.98
LIMA1-204ENST00000549064 HELBQ8NG08 1087 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-204ENST00000549064 CFAP99D6REC4 459 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms