RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RBSNQ9H1K0 784 aa7.63□□□□□ -1.19
VPS29-205ENST00000548539 PSAPP07602 524 aa7.62□□□□□ -1.19
VPS29-205ENST00000548539 NFIAQ12857 509 aa7.62□□□□□ -1.19
VPS29-205ENST00000548539 ZDHHC13Q8IUH4 622 aa7.62□□□□□ -1.19
VPS29-205ENST00000548539 SPINK2P20155 84 aa7.61□□□□□ -1.19
VPS29-205ENST00000548539 IGFBP4P22692 258 aa7.61□□□□□ -1.19
VPS29-205ENST00000548539 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.61□□□□□ -1.19
VPS29-205ENST00000548539 CEP41Q9BYV8 373 aa7.61□□□□□ -1.19
VPS29-205ENST00000548539 MUC3BQ9H195 1237 aa7.61□□□□□ -1.19
VPS29-205ENST00000548539 ADAMTS4O75173 837 aa7.6□□□□□ -1.19
VPS29-205ENST00000548539 LGR5O75473 907 aa7.6□□□□□ -1.19
VPS29-205ENST00000548539 WNT11O96014 354 aa7.6□□□□□ -1.19
VPS29-205ENST00000548539 PDIA4P13667 645 aaKnown RBP7.6□□□□□ -1.19
VPS29-205ENST00000548539 CACTIN-AS1Q8N1I8 211 aa7.6□□□□□ -1.19
VPS29-205ENST00000548539 NSUN5Q96P11 429 aaKnown RBP7.6□□□□□ -1.19
VPS29-205ENST00000548539 RTCBQ9Y3I0 505 aaKnown RBP7.6□□□□□ -1.19
VPS29-205ENST00000548539 PPME1Q9Y570 386 aa7.6□□□□□ -1.19
VPS29-205ENST00000548539 XYLBO75191 536 aa7.59□□□□□ -1.19
VPS29-205ENST00000548539 EGFRP00533 1210 aa7.59□□□□□ -1.19
VPS29-205ENST00000548539 C11orf91Q3C1V1 193 aa7.59□□□□□ -1.19
VPS29-205ENST00000548539 LARP1Q6PKG0 1096 aaKnown RBP7.59□□□□□ -1.19
VPS29-205ENST00000548539 ARMC10Q8N2F6 343 aa7.59□□□□□ -1.19
VPS29-205ENST00000548539 UTP4Q969X6 686 aaKnown RBP7.59□□□□□ -1.19
VPS29-205ENST00000548539 PPP1R12CQ9BZL4 782 aa7.59□□□□□ -1.19
VPS29-205ENST00000548539 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.58□□□□□ -1.2
VPS29-205ENST00000548539 OPLAHO14841 1288 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 TRIM26Q12899 539 aaPredicted RBP7.58□□□□□ -1.2
VPS29-205ENST00000548539 CFAP70Q5T0N1 1121 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 RNF43Q68DV7 783 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 DTX1Q86Y01 620 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 CMTR1Q8N1G2 835 aaKnown RBP7.58□□□□□ -1.2
VPS29-205ENST00000548539 RETREG2Q8NC44 543 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 TRIM33Q9UPN9 1127 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 USP20Q9Y2K6 914 aa7.58□□□□□ -1.2
VPS29-205ENST00000548539 MMP20O60882 483 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 UVSSAQ2YD98 709 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 TRIM42Q8IWZ5 723 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 VTI1AQ96AJ9 217 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 DBNDD2Q9BQY9 259 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 C7orf69Q9H7B7 122 aa7.57□□□□□ -1.2
VPS29-205ENST00000548539 QTRT2Q9H974 415 aaKnown RBP7.57□□□□□ -1.2
VPS29-205ENST00000548539 TFIP11Q9UBB9 837 aaKnown RBP7.57□□□□□ -1.2
VPS29-205ENST00000548539 HMX2A2RU54 273 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 PRR19A6NJB7 356 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 LMOD1P29536 600 aaPredicted RBP7.56□□□□□ -1.2
VPS29-205ENST00000548539 CD68P34810 354 aaPredicted RBP7.56□□□□□ -1.2
VPS29-205ENST00000548539 SOX18P35713 384 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 ACAD11Q709F0 780 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 RGL4Q8IZJ4 473 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 GALNT11Q8NCW6 608 aa7.56□□□□□ -1.2
VPS29-205ENST00000548539 ARID1BQ8NFD5 2236 aaPredicted RBP7.56□□□□□ -1.2
VPS29-205ENST00000548539 LINC01387J3KSC0 135 aa7.55□□□□□ -1.2
VPS29-205ENST00000548539 DPYDQ12882 1025 aa7.55□□□□□ -1.2
VPS29-205ENST00000548539 CDCA8Q53HL2 280 aa7.55□□□□□ -1.2
VPS29-205ENST00000548539 PBXIP1Q96AQ6 731 aa7.55□□□□□ -1.2
VPS29-205ENST00000548539 PPP1R15AO75807 674 aaPredicted RBP7.54□□□□□ -1.2
VPS29-205ENST00000548539 WISP1O95388 367 aa7.54□□□□□ -1.2
VPS29-205ENST00000548539 HOXD8P13378 290 aaPredicted RBP7.54□□□□□ -1.2
VPS29-205ENST00000548539 MYO19Q96H55 970 aa7.54□□□□□ -1.2
VPS29-205ENST00000548539 FAM46AQ96IP4 442 aaKnown RBP7.54□□□□□ -1.2
VPS29-205ENST00000548539 PODXL2Q9NZ53 605 aa7.54□□□□□ -1.2
VPS29-205ENST00000548539 ADGRE2Q9UHX3 823 aa7.54□□□□□ -1.2
VPS29-205ENST00000548539 ACIN1Q9UKV3 1341 aaKnown RBP7.53□□□□□ -1.2
VPS29-205ENST00000548539 MYRFLQ96LU7 910 aa7.53□□□□□ -1.2
VPS29-205ENST00000548539 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS29-205ENST00000548539 FOXO3O43524 673 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 PTK7Q13308 1070 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 CRTC2Q53ET0 693 aaPredicted RBP7.52□□□□□ -1.21
VPS29-205ENST00000548539 TXNDC11Q6PKC3 985 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 TREML1Q86YW5 311 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 CLEC10AQ8IUN9 316 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 SHKBP1Q8TBC3 707 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 MAFBQ9Y5Q3 323 aaPredicted RBP7.52□□□□□ -1.21
VPS29-205ENST00000548539 KCNMB2Q9Y691 235 aa7.52□□□□□ -1.21
VPS29-205ENST00000548539 DUOXA2Q1HG44 320 aa7.51□□□□□ -1.21
VPS29-205ENST00000548539 FAM83CQ9BQN1 747 aa7.51□□□□□ -1.21
VPS29-205ENST00000548539 LACRTQ9GZZ8 138 aa7.51□□□□□ -1.21
VPS29-205ENST00000548539 KCNK4Q9NYG8 393 aa7.51□□□□□ -1.21
VPS29-205ENST00000548539 SART1O43290 800 aaKnown RBP7.5□□□□□ -1.21
VPS29-205ENST00000548539 CDC27P30260 824 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 CDC25BP30305 580 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 SRPK2P78362 688 aaKnown RBP7.5□□□□□ -1.21
VPS29-205ENST00000548539 KIAA1211Q6ZU35 1233 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 NLRP13Q86W25 1043 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 ANKMY2Q8IV38 441 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 FAM20CQ8IXL6 584 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 SPACA7Q96KW9 195 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 KCNF1Q9H3M0 494 aa7.5□□□□□ -1.21
VPS29-205ENST00000548539 CARNS1A5YM72 827 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 WEE1P30291 646 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 CEP135Q66GS9 1140 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 FAM117BQ6P1L5 589 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 AEBP1Q8IUX7 1158 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 KLHL23Q8NBE8 558 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 TRAIPQ9BWF2 469 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 LRFN2Q9ULH4 789 aa7.49□□□□□ -1.21
VPS29-205ENST00000548539 SMNDC1O75940 238 aaKnown RBP eCLIP7.48□□□□□ -1.216e-11■■■■□ 20.7
VPS29-205ENST00000548539 BMP3P12645 472 aa7.48□□□□□ -1.21
VPS29-205ENST00000548539 JAG1P78504 1218 aa7.48□□□□□ -1.21
VPS29-205ENST00000548539 BEND4Q6ZU67 534 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms