RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 RPAP2Q8IXW5 612 aaPredicted RBP8.23□□□□□ -1.09
PTPRB-203ENST00000538174 HACL1Q9UJ83 578 aa8.23□□□□□ -1.09
PTPRB-203ENST00000538174 H0YIN7 160 aa8.22□□□□□ -1.09
PTPRB-203ENST00000538174 NBPF15Q8N660 670 aa8.22□□□□□ -1.09
PTPRB-203ENST00000538174 RETREG2Q8NC44 543 aa8.22□□□□□ -1.09
PTPRB-203ENST00000538174 TRIM44Q96DX7 344 aaPredicted RBP8.22□□□□□ -1.09
PTPRB-203ENST00000538174 CFHR5Q9BXR6 569 aa8.22□□□□□ -1.09
PTPRB-203ENST00000538174 SIPA1L3O60292 1781 aaPredicted RBP8.21□□□□□ -1.09
PTPRB-203ENST00000538174 ZC3H15Q8WU90 426 aaKnown RBP8.21□□□□□ -1.09
PTPRB-203ENST00000538174 TAOK3Q9H2K8 898 aa8.21□□□□□ -1.09
PTPRB-203ENST00000538174 PRKAR2BP31323 418 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 MPRIPQ6WCQ1 1025 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 RTKN2Q8IZC4 609 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 GPC2Q8N158 579 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 MCOLN1Q9GZU1 580 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 NOB1Q9ULX3 412 aaKnown RBP8.21□□□□□ -1.1
PTPRB-203ENST00000538174 CARMIL3Q8ND23 1372 aa8.21□□□□□ -1.1
PTPRB-203ENST00000538174 PEX14O75381 377 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 GSE1Q14687 1217 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 NFKBIBQ15653 356 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 OTUD6BQ8N6M0 293 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 MICAL1Q8TDZ2 1067 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 FZD9O00144 591 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 ARID4AP29374 1257 aaPredicted RBP8.2□□□□□ -1.1
PTPRB-203ENST00000538174 DDIT3P35638 169 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 HTRA3P83110 453 aa8.2□□□□□ -1.1
PTPRB-203ENST00000538174 FKBP4Q02790 459 aaKnown RBP eCLIP8.2□□□□□ -1.1
PTPRB-203ENST00000538174 TEX13AQ9BXU3 409 aaPredicted RBP8.2□□□□□ -1.1
PTPRB-203ENST00000538174 ANKRD62A6NC57 917 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 HOXB7P09629 217 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 DNAJC14Q6Y2X3 702 aaPredicted RBP8.19□□□□□ -1.1
PTPRB-203ENST00000538174 SDR16C5Q8N3Y7 309 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 OSBPL3Q9H4L5 887 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 U2SURPO15042 1029 aaKnown RBP8.19□□□□□ -1.1
PTPRB-203ENST00000538174 CHD1LQ86WJ1 897 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 DCTPP1Q9H773 170 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 IGSF5Q9NSI5 407 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 COL15A1P39059 1388 aa8.19□□□□□ -1.1
PTPRB-203ENST00000538174 PPFIA4O75335 1185 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 PLEKHO1Q53GL0 409 aaPredicted RBP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 CCDC93Q567U6 631 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 TMEM57Q8N5G2 664 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 FRAT1Q92837 279 aaPredicted RBP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 MKRN1Q9UHC7 482 aaKnown RBP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 AOX1Q06278 1338 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 VASPP50552 380 aaPredicted RBP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 KCNQ4P56696 695 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 NOGQ13253 232 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 NBPF9Q3BBW0 867 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 INTS5Q6P9B9 1019 aaKnown RBP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 KRBA2Q6ZNG9 492 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 ZNF662Q6ZS27 426 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 C2CD5Q86YS7 1000 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 GAS2L2Q8NHY3 880 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 C7orf43Q8WVR3 580 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 CAPNS2Q96L46 248 aa8.18□□□□□ -1.1
PTPRB-203ENST00000538174 DDX21Q9NR30 783 aaKnown RBP eCLIP8.18□□□□□ -1.1
PTPRB-203ENST00000538174 ZPR1O75312 459 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 CRKLP46109 303 aaKnown RBP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 FOSBP53539 338 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 RASSF7Q02833 373 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 MASTLQ96GX5 879 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 CHMP5Q9NZZ3 219 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 RRP7AQ9Y3A4 280 aaKnown RBP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 KDM3BQ7LBC6 1761 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 EPHX2P34913 555 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 TWISTNBQ3B726 338 aaPredicted RBP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 ERFEQ4G0M1 354 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 L1TD1Q5T7N2 865 aaKnown RBP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 ANKRD44Q8N8A2 993 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 SLC4A9Q96Q91 983 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 TSPAN18Q96SJ8 248 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 C22orf23Q9BZE7 217 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.17□□□□□ -1.1
PTPRB-203ENST00000538174 MBIPQ9NS73 344 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 ASAP1Q9ULH1 1129 aa8.17□□□□□ -1.1
PTPRB-203ENST00000538174 CCDC85CA6NKD9 419 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 SERPINB2P05120 415 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 CCT4P50991 539 aaKnown RBP8.16□□□□□ -1.1
PTPRB-203ENST00000538174 CLEC4GQ6UXB4 293 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 WDR70Q9NW82 654 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 MAP4K4O95819 1239 aaPredicted RBP8.16□□□□□ -1.1
PTPRB-203ENST00000538174 ERCC3P19447 782 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 SKOR2Q2VWA4 1001 aaPredicted RBP8.16□□□□□ -1.1
PTPRB-203ENST00000538174 HSP90AB3PQ58FF7 597 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 ITPRIPQ8IWB1 547 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 CNTROBQ8N137 903 aa8.16□□□□□ -1.1
PTPRB-203ENST00000538174 SLX4Q8IY92 1834 aa8.15□□□□□ -1.1
PTPRB-203ENST00000538174 AKAP11Q9UKA4 1901 aa8.15□□□□□ -1.1
PTPRB-203ENST00000538174 DHX16O60231 1041 aaKnown RBP8.15□□□□□ -1.1
PTPRB-203ENST00000538174 RAB11FIP3O75154 756 aa8.15□□□□□ -1.1
PTPRB-203ENST00000538174 ECM2O94769 699 aaPredicted RBP8.15□□□□□ -1.1
PTPRB-203ENST00000538174 EIF4A2Q14240 407 aaKnown RBP8.15□□□□□ -1.1
PTPRB-203ENST00000538174 NFIXQ14938 502 aa8.15□□□□□ -1.1
PTPRB-203ENST00000538174 CTU1Q7Z7A3 348 aaKnown RBP8.15□□□□□ -1.1
PTPRB-203ENST00000538174 TSR2Q969E8 191 aaKnown RBP8.15□□□□□ -1.1
PTPRB-203ENST00000538174 PNMA2Q9UL42 364 aa8.15□□□□□ -1.1
PTPRB-203ENST00000538174 LAMB4A4D0S4 1761 aa8.15□□□□□ -1.11
PTPRB-203ENST00000538174 DDX11L8A8MPP1 907 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms