RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NSFL1CQ9UNZ2 370 aaKnown RBP12.26□□□□□ -0.45
USP28-205ENST00000537706 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 NKX2-3Q8TAU0 364 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 STXBP5LQ9Y2K9 1186 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 GPR153Q6NV75 609 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 GIGYF2Q6Y7W6 1299 aaKnown RBP12.25□□□□□ -0.45
USP28-205ENST00000537706 SLC10A4Q96EP9 437 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 MYOZ2Q9NPC6 264 aa12.25□□□□□ -0.45
USP28-205ENST00000537706 U2SURPO15042 1029 aaKnown RBP12.24□□□□□ -0.45
USP28-205ENST00000537706 USP17L8P0C7I0 530 aa12.24□□□□□ -0.45
USP28-205ENST00000537706 PTPN12Q05209 780 aaKnown RBP12.24□□□□□ -0.45
USP28-205ENST00000537706 ZC3H12CQ9C0D7 883 aaKnown RBP12.24□□□□□ -0.45
USP28-205ENST00000537706 RRP7AQ9Y3A4 280 aaKnown RBP12.24□□□□□ -0.45
USP28-205ENST00000537706 RTL9Q8NET4 1388 aa12.23□□□□□ -0.45
USP28-205ENST00000537706 ZBTB48P10074 688 aaPredicted RBP12.23□□□□□ -0.45
USP28-205ENST00000537706 RSBN1LQ6PCB5 846 aaPredicted RBP12.23□□□□□ -0.45
USP28-205ENST00000537706 TTLL7Q6ZT98 887 aa12.23□□□□□ -0.45
USP28-205ENST00000537706 PTCH2Q9Y6C5 1203 aa12.23□□□□□ -0.45
USP28-205ENST00000537706 SIPA1L3O60292 1781 aaPredicted RBP12.22□□□□□ -0.45
USP28-205ENST00000537706 MYCP01106 439 aaPredicted RBP12.22□□□□□ -0.45
USP28-205ENST00000537706 PRAMEF18Q5VWM3 479 aa12.22□□□□□ -0.45
USP28-205ENST00000537706 PRO3102Q9H379 93 aa12.22□□□□□ -0.45
USP28-205ENST00000537706 WDHD1O75717 1129 aaPredicted RBP12.21□□□□□ -0.45
USP28-205ENST00000537706 MYL6BP14649 208 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 CRHR2Q13324 411 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 PRKG1Q13976 671 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 KIF22Q14807 665 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 HSP90AB3PQ58FF7 597 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 DEFB123Q8N688 67 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 PRDM6Q9NQX0 595 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 ANGEL1Q9UNK9 670 aaKnown RBP12.21□□□□□ -0.45
USP28-205ENST00000537706 POLR2AP24928 1970 aaKnown RBP12.21□□□□□ -0.45
USP28-205ENST00000537706 TRIOBPQ9H2D6 2365 aa12.21□□□□□ -0.45
USP28-205ENST00000537706 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.21□□□□□ -0.46
USP28-205ENST00000537706 LRCH3Q96II8 777 aa12.21□□□□□ -0.46
USP28-205ENST00000537706 KCNQ5Q9NR82 932 aa12.21□□□□□ -0.46
USP28-205ENST00000537706 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.21□□□□□ -0.46
USP28-205ENST00000537706 ZBTB7BO15156 539 aaPredicted RBP12.2□□□□□ -0.46
USP28-205ENST00000537706 HCLS1P14317 486 aaPredicted RBP12.2□□□□□ -0.46
USP28-205ENST00000537706 LDLRAD1Q5T700 205 aa12.2□□□□□ -0.46
USP28-205ENST00000537706 APOBEC3FQ8IUX4 373 aaKnown RBP12.2□□□□□ -0.46
USP28-205ENST00000537706 OGFOD1Q8N543 542 aa12.2□□□□□ -0.46
USP28-205ENST00000537706 POLLQ9UGP5 575 aa12.2□□□□□ -0.46
USP28-205ENST00000537706 WTIPA6NIX2 430 aaPredicted RBP12.19□□□□□ -0.46
USP28-205ENST00000537706 IGF2BP3O00425 579 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP28-205ENST00000537706 SOX1O00570 391 aaPredicted RBP12.19□□□□□ -0.46
USP28-205ENST00000537706 PNISRQ8TF01 805 aaKnown RBP12.19□□□□□ -0.46
USP28-205ENST00000537706 WNK4Q96J92 1243 aa12.19□□□□□ -0.46
USP28-205ENST00000537706 UNCXA6NJT0 531 aa12.19□□□□□ -0.46
USP28-205ENST00000537706 GPSM2P81274 684 aa12.19□□□□□ -0.46
USP28-205ENST00000537706 TRMT112Q9UI30 125 aaKnown RBP12.19□□□□□ -0.46
USP28-205ENST00000537706 SH3TC1Q8TE82 1336 aa12.19□□□□□ -0.46
USP28-205ENST00000537706 DDX60Q8IY21 1712 aaKnown RBP12.19□□□□□ -0.46
USP28-205ENST00000537706 PPP1R12BO60237 982 aaPredicted RBP12.18□□□□□ -0.46
USP28-205ENST00000537706 MMP14P50281 582 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 PRMT2P55345 433 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 TAF7Q15545 349 aaPredicted RBP12.18□□□□□ -0.46
USP28-205ENST00000537706 TBC1D16Q8TBP0 767 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 ZFYVE28Q9HCC9 887 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 SCAF8Q9UPN6 1271 aaKnown RBP12.18□□□□□ -0.46
USP28-205ENST00000537706 ERBB4Q15303 1308 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 DUOX1Q9NRD9 1551 aa12.18□□□□□ -0.46
USP28-205ENST00000537706 KIAA0100Q14667 2235 aaKnown RBP12.18□□□□□ -0.46
USP28-205ENST00000537706 EVI5O60447 810 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 GNRH1P01148 92 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 USP17L3A6NCW0 530 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 USP17L4A6NCW7 530 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 MCM10Q7L590 875 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 USP17L1Q7RTZ2 530 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 SH3TC2Q8TF17 1288 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 GGA1Q9UJY5 639 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 NUP98P52948 1817 aa12.17□□□□□ -0.46
USP28-205ENST00000537706 HTATSF1O43719 755 aaKnown RBP12.16□□□□□ -0.46
USP28-205ENST00000537706 UFL1O94874 794 aa12.16□□□□□ -0.46
USP28-205ENST00000537706 ANKIB1Q9P2G1 1089 aa12.16□□□□□ -0.46
USP28-205ENST00000537706 NBPF9Q3BBW0 867 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 MYO3BQ8WXR4 1341 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 CAPN2P17655 700 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 PRKAR2BP31323 418 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 GMLQ99445 158 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 PCGF6Q9BYE7 350 aa12.15□□□□□ -0.46
USP28-205ENST00000537706 FARP2O94887 1054 aaPredicted RBP12.14□□□□□ -0.47
USP28-205ENST00000537706 IREB2P48200 963 aaKnown RBP12.14□□□□□ -0.47
USP28-205ENST00000537706 TAF1CQ15572 869 aaPredicted RBP12.14□□□□□ -0.47
USP28-205ENST00000537706 MAP3K11Q16584 847 aa12.14□□□□□ -0.47
USP28-205ENST00000537706 PODNQ7Z5L7 613 aa12.14□□□□□ -0.47
USP28-205ENST00000537706 MTMR10Q9NXD2 777 aa12.14□□□□□ -0.47
USP28-205ENST00000537706 COL1A1P02452 1464 aaPredicted RBP12.14□□□□□ -0.47
USP28-205ENST00000537706 WNT10BO00744 389 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 HOXD10P28358 340 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 GJA8P48165 433 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 NLRP10Q86W26 655 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 CELF1Q92879 486 aaKnown RBP12.13□□□□□ -0.47
USP28-205ENST00000537706 SHISA4Q96DD7 197 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 PODXL2Q9NZ53 605 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 STAP2Q9UGK3 403 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 TESPA1A2RU30 521 aaPredicted RBP12.13□□□□□ -0.47
USP28-205ENST00000537706 COL9A1P20849 921 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 UBXN2AP68543 259 aa12.13□□□□□ -0.47
USP28-205ENST00000537706 EIF4G2P78344 907 aaKnown RBP eCLIP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 174.6 ms