RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ARHGAP29Q52LW3 1261 aa19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 CCDC150Q8NCX0 1101 aa19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 KINO60870 393 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 FAM160A1Q05DH4 1040 aa19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 ARMCX5Q6P1M9 558 aa19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 CCDC73Q6ZRK6 1079 aa19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 NAT10Q9H0A0 1025 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-211ENST00000506690 CEBPZQ03701 1054 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 PA2G4Q9UQ80 394 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 AMOTL2Q9Y2J4 779 aa19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 USPL1Q5W0Q7 1092 aa19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 SMARCC2Q8TAQ2 1214 aa19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.97■□□□□ 0.79
SQSTM1-211ENST00000506690 CHPF2Q9P2E5 772 aa19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 NWD1Q149M9 1564 aa19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 EIF2S2P20042 333 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 AMPHP49418 695 aa19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 KRT32Q14532 448 aa19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 ZNF589Q86UQ0 364 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 FTOQ9C0B1 505 aaKnown RBP eCLIP19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 ORC3Q9UBD5 711 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 TBX22Q9Y458 520 aa19.96■□□□□ 0.79
SQSTM1-211ENST00000506690 ADAMTSL3P82987 1691 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 NAA16Q6N069 864 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 EAF2Q96CJ1 260 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 UBXN6Q9BZV1 441 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 ARGLU1Q9NWB6 273 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 PTPRUQ92729 1446 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 HOXB7P09629 217 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 DHX8Q14562 1220 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 ATL3Q6DD88 541 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 TMCO3Q6UWJ1 677 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 FSD1Q9BTV5 496 aa19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-211ENST00000506690 PHLPP2Q6ZVD8 1323 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 TAF5LO75529 589 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 SASH1O94885 1247 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 RAD51AP2Q09MP3 1159 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 TEX35Q5T0J7 233 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 SYTL4Q96C24 671 aaPredicted RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 BPIFA3Q9BQP9 254 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 FEZ2Q9UHY8 353 aaPredicted RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 SFPQP23246 707 aaKnown RBP eCLIP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 ETF1P62495 437 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 TPM4P67936 248 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 NEK1Q96PY6 1258 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 USP28Q96RU2 1077 aa19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 LLPHQ9BRT6 129 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 XPO4Q9C0E2 1151 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-211ENST00000506690 ATP8B1O43520 1251 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 EIF4A1P60842 406 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 SCRN1Q12765 414 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 NUTM2GQ5VZR2 741 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 Q6ZUG5 572 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 UBXN4Q92575 508 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 ALDH1L1O75891 902 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 MUM1L1Q5H9M0 696 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 TMC6Q7Z403 805 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 FSIP1Q8NA03 581 aa19.93■□□□□ 0.78
SQSTM1-211ENST00000506690 TXLNBQ8N3L3 684 aa19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 FMR1NBQ8N0W7 255 aaPredicted RBP19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 ERCC4Q92889 916 aaPredicted RBP19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 SRRTQ9BXP5 876 aaKnown RBP19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 CCDC8Q9H0W5 538 aaPredicted RBP19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 BOLA2Q9H3K6 86 aa19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 IFNKQ9P0W0 207 aa19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 CEMIPQ8WUJ3 1361 aa19.92■□□□□ 0.78
SQSTM1-211ENST00000506690 TADA3O75528 432 aa19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 ZNF396Q96N95 335 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 CHMP4AQ9BY43 222 aa19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 TLR7Q9NYK1 1049 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 MED1Q15648 1581 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 NSUN7Q8NE18 718 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 C9orf78Q9NZ63 289 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-211ENST00000506690 ABCC6O95255 1503 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 KDM3BQ7LBC6 1761 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 COL15A1P39059 1388 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 CCP110O43303 1012 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 NRDCO43847 1150 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 PFKFB2O60825 505 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 SMC2O95347 1197 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 HSP90B1P14625 803 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 TRIM65Q6PJ69 517 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 TRERF1Q96PN7 1200 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 DPCR1Q3MIW9 517 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 NEK11Q8NG66 645 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 DNAI1Q9UI46 699 aa19.9■□□□□ 0.78
SQSTM1-211ENST00000506690 EFCAB8A8MWE9 144 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 ME1P48163 572 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 HOMER1Q86YM7 354 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 TRIM34Q9BYJ4 488 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 HDAC5Q9UQL6 1122 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 DIP2AQ14689 1571 aa19.89■□□□□ 0.77
SQSTM1-211ENST00000506690 POLR3GO15318 223 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-211ENST00000506690 CTDNEP1O95476 244 aa19.88■□□□□ 0.77
SQSTM1-211ENST00000506690 TPM1P09493 284 aa19.88■□□□□ 0.77
SQSTM1-211ENST00000506690 CCDC158Q5M9N0 1113 aa19.88■□□□□ 0.77
SQSTM1-211ENST00000506690 MRPS27Q92552 414 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-211ENST00000506690 FBXW7Q969H0 707 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms