RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PUF60Q9UHX1 559 aaKnown RBP15.07■□□□□ 0
PTPRF-215ENST00000496447 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 ABCC1P33527 1531 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 SMARCC2Q8TAQ2 1214 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 CLIP2Q9UDT6 1046 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 NUP160Q12769 1436 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 CCDC102BQ68D86 513 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 LUZP1Q86V48 1076 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 MRPL50Q8N5N7 158 aaKnown RBP15.06■□□□□ 0
PTPRF-215ENST00000496447 GSTTP1A0A1W2PQM5 241 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 PLS1Q14651 629 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 EXOC1Q9NV70 894 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 PAG1Q9NWQ8 432 aa15.06■□□□□ 0
PTPRF-215ENST00000496447 TNNT1P13805 278 aa15.05■□□□□ 0
PTPRF-215ENST00000496447 RBM25P49756 843 aaKnown RBP15.05■□□□□ 0
PTPRF-215ENST00000496447 KIF4BQ2VIQ3 1234 aa15.05■□□□□ 0
PTPRF-215ENST00000496447 HELBQ8NG08 1087 aaPredicted RBP15.05■□□□□ 0
PTPRF-215ENST00000496447 LRRC2Q9BYS8 371 aa15.05■□□□□ 0
PTPRF-215ENST00000496447 STX1AQ16623 288 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 RBM17Q96I25 401 aaKnown RBP15.05■□□□□ -0
PTPRF-215ENST00000496447 PA2G4Q9UQ80 394 aaKnown RBP15.05■□□□□ -0
PTPRF-215ENST00000496447 NAPAP54920 295 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 ALG1Q9BT22 464 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 GDPD2Q9HCC8 539 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 LMOD1P29536 600 aaPredicted RBP15.05■□□□□ -0
PTPRF-215ENST00000496447 CASQ1P31415 396 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 NUCB1Q02818 461 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 PTPN14Q15678 1187 aa15.05■□□□□ -0
PTPRF-215ENST00000496447 SDSP20132 328 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 HOXC9P31274 260 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 GNAT2P19087 354 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 CA8P35219 290 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 GTF2A1P52655 376 aaPredicted RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 PDE1AP54750 535 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 ANKRD44Q8N8A2 993 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 EYA1Q99502 592 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 CDCA7Q9BWT1 371 aaPredicted RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 STK32BQ9NY57 414 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 RBM8AQ9Y5S9 174 aaKnown RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 NUP153P49790 1475 aaKnown RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 B4DLN1 442 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 BMP15O95972 392 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 MRPL12P52815 198 aaKnown RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 GPATCH11Q8N954 259 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 TBC1D2Q9BYX2 928 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 MCM9Q9NXL9 1143 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 XRCC6P12956 609 aaKnown RBP eCLIP15.04■□□□□ -0
PTPRF-215ENST00000496447 HDAC1Q13547 482 aaPredicted RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 ZSCAN16Q9H4T2 348 aaPredicted RBP15.04■□□□□ -0
PTPRF-215ENST00000496447 HOOK3Q86VS8 718 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 IP6K1Q92551 441 aa15.04■□□□□ -0
PTPRF-215ENST00000496447 RNMTO43148 476 aaKnown RBP15.03■□□□□ -0
PTPRF-215ENST00000496447 LDHBP07195 334 aaKnown RBP15.03■□□□□ -0
PTPRF-215ENST00000496447 CWF19L2Q2TBE0 894 aaKnown RBP15.03■□□□□ -0
PTPRF-215ENST00000496447 GBP3Q9H0R5 595 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 MMRN2Q9H8L6 949 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 IGHDP01880 384 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 TNPO1Q92973 898 aaKnown RBP15.03■□□□□ -0
PTPRF-215ENST00000496447 PAFAH1B1P43034 410 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 CRACR2AQ9BSW2 395 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 RMND1Q9NWS8 449 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 CCNL1Q9UK58 526 aaPredicted RBP15.03■□□□□ -0
PTPRF-215ENST00000496447 NECAB1Q8N987 351 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 CCDC113Q9H0I3 377 aa15.03■□□□□ -0
PTPRF-215ENST00000496447 CCDC91Q7Z6B0 441 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 MAGEB6Q8N7X4 407 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 TRIM47Q96LD4 638 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 CNBD1Q8NA66 436 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 MIGA1Q8NAN2 632 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 UGGT2Q9NYU1 1516 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 TBX22Q9Y458 520 aa15.02■□□□□ -0
PTPRF-215ENST00000496447 PRAG1Q86YV5 1406 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 STAT6P42226 847 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 ISM2Q6H9L7 571 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 ALS2CR12Q96Q35 445 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 GOPCQ9HD26 462 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 RNF113AO15541 343 aaKnown RBP15.02□□□□□ -0.01
PTPRF-215ENST00000496447 USP37Q86T82 979 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 KRT222Q8N1A0 295 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 KIF18AQ8NI77 898 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 TCEANC2Q96MN5 208 aa15.02□□□□□ -0.01
PTPRF-215ENST00000496447 TMCO5BA8MYB1 307 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 C6orf50Q9HD87 102 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 URI1O94763 535 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-215ENST00000496447 CALM1P0DP23 149 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 CALM2P0DP24 149 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 CALM3P0DP25 149 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 GTF2F1P35269 517 aaKnown RBP eCLIP15.01□□□□□ -0.01
PTPRF-215ENST00000496447 TNNI2P48788 182 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 NMIQ13287 307 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-215ENST00000496447 Q6ZUG5 572 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 DYDC1Q8WWB3 177 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 PLCD4Q9BRC7 762 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 SPDYE3A6NKU9 549 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 SYKP43405 635 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 RRP36Q96EU6 259 aaKnown RBP15.01□□□□□ -0.01
PTPRF-215ENST00000496447 PUS7Q96PZ0 661 aaKnown RBP15.01□□□□□ -0.01
PTPRF-215ENST00000496447 RTL9Q8NET4 1388 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 PEG3Q9GZU2 1588 aa15.01□□□□□ -0.01
PTPRF-215ENST00000496447 TMC6Q7Z403 805 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms